HsaEX0057756 @ hg19
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73169165-73188377:-
Coord C1 exon
chr2:73188260-73188377
Coord A exon
chr2:73184109-73184232
Coord C2 exon
chr2:73169165-73172228
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGGGATGTGGTCCACTATAGGAG
3' ss Score
4.19
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACGGCTCTCCTGCAGGCACGCCCCCGGCTGCTCCTCCCTGTGCAAAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTCTTCCCGCAAATGTCAGAG
Seq A exon
GAGGAAGAAAAACCATCAAGAAGGGGAAGAAGCAGCCAAGGGCACAGGGAGAACCCAGATGGAGTAACTTCATGGAAGCTGAGGACTTGGGCGATTCAAAGAGGAGGGGCTGTCTCCAGAGTGG
Seq C2 exon
ATTGAAACATCCCAATTAGAGCCGGAGATAGCCCAGGCCACGAGCAGCCGGACAGTGGTGTACAACAAGGGGTTGTGAGTGTGGTCAGCGGCCTGGGGACGGAGCACTGTGCAGCCGGGGAGCTGAGGGGCAGGGCCGTAGACTCACGGCTGCACCTGCAGGGAGCAGCACGCCAACCCCAGCAGTCCTGGGCCCCCTGGGAGAGTGCTCAACCTACAGTGGAGGGAGACTGACCCATTCACATTTTAACATAGGCAAGAGGAGTTCTAACACATTTCGTACAAAAAAATAATCAAGTGCATTTCTGGGCCTTATGTGGGGTTGTCAAAACTCCACTCAGCACAATTATGTGTGAAGCTGAAAAATTGTAGAGTGCCCATGGGGTAGAAGTAGAATCCTTTTATACTTTGGTTCCTTTTTTATTTTTATTTTTTATCAGAATCAAATCTGAGCCTTAGTTTCAGCTGACCAGAAGTGGCAGGAGGACAGGTGGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040_MULTIEX1-9/9=8-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.476 C2=0.086
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(12.6=100)
A:
PF0382012=Mtc=PD(1.0=7.1)
C2:
PF0382012=Mtc=PD(7.8=92.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCTCTTCCCGCAAATG
R:
TAGGTTGAGCACTCTCCCAGG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)