HsaEX0057755 @ hg19
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73169165-73195662:-
Coord C1 exon
chr2:73195577-73195662
Coord A exon
chr2:73188260-73188377
Coord C2 exon
chr2:73169165-73172228
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTCTCTCCCTCACAGGAC
3' ss Score
12.96
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCCCTGCTGGAGACGGCGCTGACGCGAGTGGTCCTGCCCATGCCCATCCTGGTGCTACCCCCGATCGTCATGTCCATGCTGGAGAA
Seq A exon
GACGGCTCTCCTGCAGGCACGCCCCCGGCTGCTCCTCCCTGTGCAAAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTCTTCCCGCAAATGTCAGAG
Seq C2 exon
ATTGAAACATCCCAATTAGAGCCGGAGATAGCCCAGGCCACGAGCAGCCGGACAGTGGTGTACAACAAGGGGTTGTGAGTGTGGTCAGCGGCCTGGGGACGGAGCACTGTGCAGCCGGGGAGCTGAGGGGCAGGGCCGTAGACTCACGGCTGCACCTGCAGGGAGCAGCACGCCAACCCCAGCAGTCCTGGGCCCCCTGGGAGAGTGCTCAACCTACAGTGGAGGGAGACTGACCCATTCACATTTTAACATAGGCAAGAGGAGTTCTAACACATTTCGTACAAAAAAATAATCAAGTGCATTTCTGGGCCTTATGTGGGGTTGTCAAAACTCCACTCAGCACAATTATGTGTGAAGCTGAAAAATTGTAGAGTGCCCATGGGGTAGAAGTAGAATCCTTTTATACTTTGGTTCCTTTTTTATTTTTATTTTTTATCAGAATCAAATCTGAGCCTTAGTTTCAGCTGACCAGAAGTGGCAGGAGGACAGGTGGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040_MULTIEX1-8/9=6-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0382012=Mtc=PD(2.7=16.7)
A:
PF0382012=Mtc=FE(12.6=100)
C2:
PF0382012=Mtc=PD(7.8=92.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATCGTCATGTCCATGCTG
R:
TAGGTTGAGCACTCTCCCAGG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)