HsaEX0057754 @ hg19
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73188260-73195662:-
Coord C1 exon
chr2:73195577-73195662
Coord A exon
chr2:73194366-73194452
Coord C2 exon
chr2:73188260-73188377
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTCTGCTCTACTAGAAT
3' ss Score
8.35
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GCCCTGCTGGAGACGGCGCTGACGCGAGTGGTCCTGCCCATGCCCATCCTGGTGCTACCCCCGATCGTCATGTCCATGCTGGAGAA
Seq A exon
AATGTCATCTCCATGAGGCACGTCCATCCTTTTGTTCACTGCCCTGCCCAGCATCTAGCACAGTTCCTGCCACACAATAGATGCTCA
Seq C2 exon
GACGGCTCTCCTGCAGGCACGCCCCCGGCTGCTCCTCCCTGTGCAAAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTCTTCCCGCAAATGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040_MULTIEX1-7/9=6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=PD(2.7=16.7)
A:
PF0382012=Mtc=PD(1.2=50.0)
C2:
PF0382012=Mtc=FE(12.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCCCATCCTGGTGCTA
R:
CTCTGACATTTGCGGGAAGAGG
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)