HsaEX0057753 @ hg19
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73188260-73198814:-
Coord C1 exon
chr2:73198699-73198814
Coord A exon
chr2:73195577-73195662
Coord C2 exon
chr2:73188260-73188377
Length
86 bp
Sequences
Splice sites
3' ss Seq
AGCTTCTGCCTGCCCCTCAGGCC
3' ss Score
7.17
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CCAGTGCCAATATCTGCAATGTGGTCCTGATGCGGTACGGGGAGCTGGAGGAAGGGATTGATGTCCTGGACAGCGATGGCAACCTCGTGGGCTCCTCCAAGATCGCAGCCCGACAC
Seq A exon
GCCCTGCTGGAGACGGCGCTGACGCGAGTGGTCCTGCCCATGCCCATCCTGGTGCTACCCCCGATCGTCATGTCCATGCTGGAGAA
Seq C2 exon
GACGGCTCTCCTGCAGGCACGCCCCCGGCTGCTCCTCCCTGTGCAAAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTCTTCCCGCAAATGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040_MULTIEX1-6/9=5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.137 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(12.3=100)
A:
PF0382012=Mtc=PD(2.7=16.7)
C2:
PF0382012=Mtc=FE(12.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTGATGTCCTGGACAGC
R:
ATTTGCGGGAAGAGGCTGATG
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)