GgaEX1052173 @ galGal3
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
NA
Coordinates
chr4:93374189-93385326:+
Coord C1 exon
chr4:93374189-93374304
Coord A exon
chr4:93376378-93376463
Coord C2 exon
chr4:93385209-93385326
Length
86 bp
Sequences
Splice sites
3' ss Seq
GGTTTGTTCTTCCTTTCCAGGCA
3' ss Score
10.17
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCAGTGCCAATATCTGCAACGTTGTCCTGATGAGGCACACGGAGCTGGAAGAAGGAATTGATGTTTTGGACAATAATGGAAACATCGTCGGCTCTTCCAGAATTGCTGCAAAACAT
Seq A exon
GCACTGCTAGAAACAGCCCTGACTAGAGTGGTCCTGCCGATGCCTATACTGGTTCTACCTCCAATTATTATGTCCATACTGGAAAA
Seq C2 exon
GACATCACTCCTGAGGTCCCGTCCCCGGATGGTTCTCCCAGTCCAAAGCCTTGTGTGCCTCGCTGCCTTTGGCCTGGCCCTCCCCTTGGCAATCAGTCTCTTTCCACAGATGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-'17-29,'17-27,18-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(12.3=100)
A:
PF0382012=Mtc=FE(9.1=100)
C2:
PF0382012=Mtc=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGAGCTGGAAGAAGGAA
R:
AGAGACTGATTGCCAAGGGGA
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]