MmuEX6005278 @ mm9
Exon Skipping
Gene
ENSMUSG00000033720 | Sfxn5
Description
sideroflexin 5 [Source:MGI Symbol;Acc:MGI:2137681]
Coordinates
chr6:85184374-85186949:-
Coord C1 exon
chr6:85186834-85186949
Coord A exon
chr6:85184757-85184842
Coord C2 exon
chr6:85184374-85184617
Length
86 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGTCCCCATCCGCAGGCC
3' ss Score
9.81
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGTTAGAGGAAGGAATTGATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACAC
Seq A exon
GCCCTGCTGGAGACAGCTCTGACACGTGTGGTTCTGCCTATGCCCATTCTGGTGCTTCCTCCAATCGTCATGTCCATGCTGGAGAA
Seq C2 exon
GCAGTTGGCTGGTGCTCAATGCTGCCGGGTCACCCATGGAAAAGCATGGCTCTGCCCTGGTGGAGGGACAGGGTAGCTGGCGGTTTGGGTCAGAGTCTGTGTGACCCTGTGAATGTAAACCCAAGCCCTCGGGGGAGAAGCATGCGGATCTCTGTGAGTTTAAGACCAACCTAGACTACATAATGAGTCTCGGGCCACATGTCTTTTTAAAAATTAATTAATTGTAATAAAGCAAAAGTGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033720-'21-23,'21-22,22-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(12.3=100)
A:
PF0382012=Mtc=FE(10.8=100)
C2:
PF0382012=Mtc=PD(5.4=53.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCAAAGATTGCAGCCA
R:
CAGAGATCCGCATGCTTCTCC
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: