GgaEX0023726 @ galGal3
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
NA
Coordinates
chr4:93376378-93400504:+
Coord C1 exon
chr4:93376378-93376463
Coord A exon
chr4:93385209-93385326
Coord C2 exon
chr4:93399993-93400504
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACACAGTCTTTCCTTTCCAGGAC
3' ss Score
9.66
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCACTGCTAGAAACAGCCCTGACTAGAGTGGTCCTGCCGATGCCTATACTGGTTCTACCTCCAATTATTATGTCCATACTGGAAAA
Seq A exon
GACATCACTCCTGAGGTCCCGTCCCCGGATGGTTCTCCCAGTCCAAAGCCTTGTGTGCCTCGCTGCCTTTGGCCTGGCCCTCCCCTTGGCAATCAGTCTCTTTCCACAGATGTCCGAG
Seq C2 exon
ATCGAGACGTCTCGCCTGGAGCCGGAGATCGCAATGGCCACCCCCAGTAAGACCGTAATCTACAACAAGGGGTTGTAAGTGGGAGCTGCAGACCCCTCCACCCAGAAGATCTGGGGATGGAGAGGGGGAAACGTGAAATGTCGACTGGGAGAGACAACACAAATCCTAGAGCTCAGCGATAGTCCTACTGCTCCCAGAGAGCGGGAGTGGGGTAACACTTTTGGAGAACTGACACCTCTCACACCACTCAACAAAATTAACATTAAACGTTTTAACTTAGCAACAGCGAGAAACTACATTCAAACACTTTAGACGACTAGCAGAGGAATGATCTCTAAACTTCTAGCACTGCATGGAGGGAAGTTTACGGGATGGTTACATGGCTGTACCTAACTACATGGAAGTAGGCTTCACCCAGCAAATTTTGTTTTCAATGCGAATTAAATCACAGCACTGACACTGCACAAAAGTCATTCTGCAGAGACTGACGGGTGCGTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-'18-30,'18-29,19-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.1=100)
A:
PF0382012=Mtc=FE(12.6=100)
C2:
PF0382012=Mtc=PD(7.8=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCGATGCCTATACTGG
R:
TGGGAGCAGTAGGACTATCGC
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]