RnoEX0080185 @ rn6
Exon Skipping
Gene
ENSRNOG00000037871 | Sfxn5
Description
sideroflexin 5 [Source:RGD Symbol;Acc:628706]
Coordinates
chr4:116993914-117014718:-
Coord C1 exon
chr4:117014633-117014718
Coord A exon
chr4:117008817-117008934
Coord C2 exon
chr4:116993914-116995332
Length
118 bp
Sequences
Splice sites
3' ss Seq
GGCCCTCCTTCTCTCCACAGGAC
3' ss Score
13.28
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCCCTGCTGGAGACAGCTCTGACACGAGTGGTTCTGCCTATGCCCATCCTGGTGCTCCCCCCGATCGTCATGTCCATGCTGGAGAA
Seq A exon
GACAGCTCTCTTGCAAGCACGCCCGCGGCTACTCCTACCTGTGCATAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCCCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAG
Seq C2 exon
ATTGAAACCTCCCAATTGGAGCCTGAGATAGCCCGGGCTACAAGCAGCCGGACAGTGGTGTACAACAAGGGGCTGTGAGTGAAGATAGCCGGCCTGGGAACACAGCACTGTCCAGGCCAGGCATTCGGGGTGGGGAAAGAAGTCTCATGAGCTGTATCTGCCGGGAGGGGCTGCCTGGAAAGCAGTCAACCTCTGTCAGTAAGGAGACTAACCATTCACATTTTAACATAGGGGAGAGGAATTCTGACACATTTCCTACACACAAAAAAAAAAAAATCAAGTGCATCTCTGGGCCTTACATGGGGTCGGCTAAACTCCACTCAGCACAATTTCGTCTGAGCTAAAGAACTATAGAGTGCTCCTGGGGTAGAAGTAGTATCCTTTTATACGTTTACTTTTTTTGTTTTAATTTTTTTAATTAGAAGCAAGTCTGAGCCTTGGTTGCAGCTGACCAGAAGCAGCAGGTGGACAGGTGATGGGAGCCAGAGGAGCCTGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037871_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.1=100)
A:
PF0382012=Mtc=FE(12.6=100)
C2:
PF0382012=Mtc=PD(7.8=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAGCTCTGACACGAG
R:
CCGGCAGATACAGCTCATGAG
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]