DreEX0065741 @ danRer10
Exon Skipping
Gene
ENSDARG00000026137 | sfxn5b
Description
sideroflexin 5b [Source:ZFIN;Acc:ZDB-GENE-050706-107]
Coordinates
chr14:46340699-46346747:+
Coord C1 exon
chr14:46340699-46340784
Coord A exon
chr14:46344889-46345006
Coord C2 exon
chr14:46345156-46346747
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTCTTACTGTCCTCCGTCAGGCT
3' ss Score
7.31
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GCACTGATAGAGACGGCGCTGACACGAGTTGCTCTACCGCTGCCAATCTTTGTACTTCCACCAATAATAATGGCCTTCTTGGAAAA
Seq A exon
GCTTCCTCTACTGCAGGCTCGTCGCAGGCTGATGCTGCCCGTACACAGTCTGGTTTGTCTTCTGGTCTTTGGTTTGTCCTTGCCGCTGGCCATCAGCCTCTTTCCTCAGATGTCAGAG
Seq C2 exon
ATCGAGGCATCTCACCTTGAGCCGGAAATTGCCATGGCAACAGATTGCAAGGTGCTGACTTACAACAAGGGCCTGTGATGAAGACGAGAGGAGTTTAATCAGCTGCAGACGACGGTGCAAACAGTGGCTGTGTCTGAAATCAACACCTATACCCTTTAATAGTGCACTGTTTGAGGGAGCAGCCATTTGTAGTGGTGCTTTAAACCATAGTGGTGGATGTTTAATCAAAGCACAGCAATATTAGGGGAAAATCGATGTACGGTCAATGATATGGAAGTCCCTTTCTGCCAGGTTAAAAAAAAAAGCCTGCCTTTAAAAGTCAACATTATGAGATAAAATGTCCAAATTGTGACTAAAAAGTTGAAATTTTGAGTCTAAATTCTATTTTACTGTCAAAATTGTGATTTGTAAAGTCTAAATGATAACTTAAAAAGTTGAAATTATGATTTTGCTTATTGAAATTATGTTATAAAATGAAAGAAAGAAGTCCTGACTTAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026137-'16-12,'16-11,17-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.1=100)
A:
PF0382012=Mtc=FE(12.6=100)
C2:
PF0382012=Mtc=PD(7.8=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACACGAGTTGCTCTACC
R:
AATGGCTGCTCCCTCAAACAG
Band lengths:
256-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]