GgaEX0023726 @ galGal4
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr4:89341240-89369194:+
Coord C1 exon
chr4:89341240-89341325
Coord A exon
chr4:89350071-89350188
Coord C2 exon
chr4:89364855-89369194
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACACAGTCTTTCCTTTCCAGGAC
3' ss Score
9.66
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCACTGCTAGAAACAGCCCTGACTAGAGTGGTCCTGCCGATGCCTATACTGGTTCTACCTCCAATTATTATGTCCATACTGGAAAA
Seq A exon
GACATCACTCCTGAGGTCCCGTCCCCGGATGGTTCTCCCAGTCCAAAGCCTTGTGTGCCTCGCTGCCTTTGGCCTGGCCCTCCCCTTGGCAATCAGTCTCTTTCCACAGATGTCCGAG
Seq C2 exon
ATCGAGACGTCTCGCCTGGAGCCGGAGATCGCAATGGCCACCCCCAGTAAGACCGTAATCTACAACAAGGGGTTGTAAGTGGGAGCTGCAGACCCCTCCACCCAGAAGATCTGGGGATGGAGAGGGGGAAACGTGAAATGTCGACTGGGAGAGACAACACAAATCCTAGAGCTCAGCGATAGTCCTACTGCTCCCAGAGAGCGGGAGTGGGGTAACACTTTTGGAGAACTGACACCTCTCACACCACTCAACAAAATTAACATTAAACGTTTTAACTTAGCAACAGCGAGAAACTACATTCAAACACTTTAGACGACTAGCAGAGGAATGATCTCTAAACTTCTAGCACTGCATGGAGGGAAGTTTACGGGATGGTTACATGGCTGTACCTAACTACATGGAAGTAGGCTTCACCCAGCAAATTTTGTTTTCAATGCGAATTAAATCACAGCACTGACACTGCACAAAAGTCATTCTGCAGAGACTGACGGGTGCGTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-'23-34,'23-31,24-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.1=100)
A:
PF0382012=Mtc=FE(12.6=100)
C2:
PF0382012=Mtc=PD(7.8=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCGATGCCTATACTGG
R:
TGGGAGCAGTAGGACTATCGC
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]