MmuEX0042010 @ mm10
Exon Skipping
Gene
ENSMUSG00000033720 | Sfxn5
Description
sideroflexin 5 [Source:MGI Symbol;Acc:MGI:2137681]
Coordinates
chr6:85213049-85234848:-
Coord C1 exon
chr6:85234763-85234848
Coord A exon
chr6:85229194-85229311
Coord C2 exon
chr6:85213049-85215746
Length
118 bp
Sequences
Splice sites
3' ss Seq
GGCCTTCCTTCTCTCCACAGGAC
3' ss Score
13.3
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCCCTGCTGGAGACAGCTCTGACACGTGTGGTTCTGCCTATGCCCATTCTGGTGCTTCCTCCAATCGTCATGTCCATGCTGGAGAA
Seq A exon
GACAGCTCTCTTGCAAGCACGCCCGCGGCTACTCCTACCTGTGCATAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAG
Seq C2 exon
ATTGAAACCTCCCAATTGGAGCCTGAGATAGCCCGGGCTACCAGCAGCCGGACAGTGGTGTACAATAAGGGGCTGTGAGTGAAGACCAGCCGGCCTGGGCACACAGCACTATCCAGGCCGGGCGTTCGGGGTGGGGAGAGAAGTCTCTTGAGCTGTCTCTGCAAGGAGGGGCTGCCTGGAAAGCAGCCAACCTCCGTCAGTAGGGAGACTAACCATTCACATTTTAACATAGGGGAGAGGAATTCTGACACATTTCCTACACAAAAAGAATCAAGTGCATCTCTGGGCCTTACATGGGGTCAGCTAAACTCCACTCAGCACAATTTCGTGTGAGCTAAAGAACTGTAGAGTGCTTCTGGGGTAGAAGTAGTATCCTTTTATATGTTCTTTTTTTTTTTTTTTTCGGTTTGTTTTAATTTTTTTTTTATTAGAAGCAAGTCTGAGCCTTGGTTGCAGCTGACCAAAAGTAGCAGGACAGGTGGCGGGAGCCAGAGGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033720_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(20.6=100)
A:
PF0382012=Mtc=FE(12.6=100)
C2:
PF0382012=Mtc=PD(17.6=92.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCTTCCTCCAATCGTC
R:
GTCTCCCTACTGACGGAGGTT
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types