HsaEX0059041 @ hg38
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6438447-6438981:-
Coord C1 exon
chr19:6438881-6438981
Coord A exon
chr19:6438724-6438771
Coord C2 exon
chr19:6438447-6438534
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGCAACCTCTGCCTTCCAGGTT
3' ss Score
7.73
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCCACCTCTGCCTCCCAGGTTCAAGCAATTCTCCCACCTCAGCCTCCCGAGCAGCTAGAACCACAGGCATATGCCACCATGCCTGGCTAATTTCTTGTTTG
Seq A exon
GTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGTATTACAG
Seq C2 exon
GATTTCATCATGTTGCCCAGGCTCATCTCGAACTCGTGGGGTCAAGGAATTCGCCAGCCTTCAGCCTCCCAACGTGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648-'30-41,'30-40,31-41
Average complexity
C2
Mappability confidence:
100%=75=50%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0015322=Mito_carr=FE(26.2=100)
C2:
PF0015322=Mito_carr=PD(35.7=66.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCCAGGTTCAAGCAATT
R:
CGAATTCCTTGACCCCACGAG
Band lengths:
145-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development