HsaEX0059041 @ hg19
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:19375]
Coordinates
chr19:6438458-6444312:-
Coord C1 exon
chr19:6444162-6444312
Coord A exon
chr19:6438735-6438832
Coord C2 exon
chr19:6438458-6438545
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTCTTGCTCTTGTTTCCCAGGCT
3' ss Score
8.86
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACTCTGAAGAACTGGTGGCTTCAGCAGTACAGCCACGACTCGGCAGACCCAGGCATCCTCGTGCTCCTGGCCTGCGGTACCATATCCAGCACCTGCGGCCAGATAGCCAGTTACCCGCTGGCCCTGGTCCGGACCCGCATGCAGGCACAAG
Seq A exon
GCTGGAGTACAGTGGCTCGATTTCAGATCACTGCAACCTCTGCCTTCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGTATTACAG
Seq C2 exon
GATTTCATCATGTTGCCCAGGCTCATCTCGAACTCGTGGGGTCAAGGAATTCGCCAGCCTTCAGCCTCCCAACGTGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648_MULTIEX1-5/7=3-6
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(29.6=15.7),PF126173=LdpA_C=FE(59.5=100),PF0015322=Mito_carr=PU(59.0=70.6)
A:
PF126173=LdpA_C=FE(19.0=100),PF0015322=Mito_carr=FE(26.2=100)
C2:
PF0015322=Mito_carr=PD(35.7=66.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAACTGGTGGCTTCAGCA
R:
ATGAGCCTGGGCAACATGATG
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)