HsaEX0059042 @ hg19
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:19375]
Coordinates
chr19:6436093-6444312:-
Coord C1 exon
chr19:6444162-6444312
Coord A exon
chr19:6438458-6438545
Coord C2 exon
chr19:6436093-6436475
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTTTGTGGAAATAGGAT
3' ss Score
7.03
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
ACTCTGAAGAACTGGTGGCTTCAGCAGTACAGCCACGACTCGGCAGACCCAGGCATCCTCGTGCTCCTGGCCTGCGGTACCATATCCAGCACCTGCGGCCAGATAGCCAGTTACCCGCTGGCCCTGGTCCGGACCCGCATGCAGGCACAAG
Seq A exon
GATTTCATCATGTTGCCCAGGCTCATCTCGAACTCGTGGGGTCAAGGAATTCGCCAGCCTTCAGCCTCCCAACGTGCTGGGATTACAG
Seq C2 exon
CCGGTGGTCATGCCATGAGCAGCCTTATGGAGAGGACCATGTGGTAAGGAACTCAGCCAATAGCCATGTAACTGAGCTTGGAAGAGGATCTTGCTGTCCTGGCCAACATCTCACTGCAATTCTATCAGTTGAATTCCCTGGATAGTCCAAGCTTTGTGGATCCCTCCACCGAAACAACTGGATCCCAGTACCTGAATCCTGAATCTTAGACTCTTATACTTCAAACACTGATCACGGGAACAGCCGGCTCAGCGGCTCCTGAGTTCCTAATGCTCAGAATATGGGTGAGATGATAAATGTTTGTTGTGTTAAGCTGCCAACCTTTGGCGGGGGGGTAATTCGTCACATGGCAACAGCTGGCTAATACATATATACCTACATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648_MULTIEX1-6/7=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(29.6=15.7),PF126173=LdpA_C=FE(59.5=100),PF0015322=Mito_carr=PU(59.0=70.6)
A:
PF0015322=Mito_carr=PD(35.7=66.7)
C2:
PF126173=LdpA_C=PD(15.5=81.2),PF0015322=Mito_carr=PD(13.1=50.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAACTGGTGGCTTCAGCA
R:
CTCCATAAGGCTGCTCATGGC
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)