HsaEX0059046 @ hg19
Exon Skipping
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]
Coordinates
chr9:130860583-130863501:+
Coord C1 exon
chr9:130860583-130861004
Coord A exon
chr9:130861554-130861664
Coord C2 exon
chr9:130863375-130863501
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGTTTCCCTGCTACCCCCAGTGC
3' ss Score
6.23
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
CGGTGACGTCAGCCCTGATCTTTGTGCCTCTCACTTGAGCAACCTGATGCCACCTTCTCCCCCGGGCTCTGTGTTCATTGGCTGTTGGCAGGACTTGCCGTGGGAGGGCTTTTTTCTTTTTTCAATTAAGTAAAAGGGCAGGGCTTAAGCAGCCAATGACAGCTGAGGCCAGGCTTGTCTTATGCAAGTTTCCCGGGACCGGCAGCATTTAGGGAACTTGCTCCCGGTGGTGAGGGCAGTGGAGCACCCAGCAGGCCGCCAACATGCTCTGTCTGTGCCTGTATGTGCCGGTCATCGGGGAAGCCCAGACCGAGTTCCAGTACTTTGAGTCGAAGGGGCTCCCTGCCGAGCTGAAGTCCATTTTCAAGCTCAGTGTCTTCATCCCCTCCCAGGAATTCTCCACCTACCGCCAGTGGAAGCAG
Seq A exon
TGCCCACTGTGCACCAAGGGGGATTTGCAGATCCAAGGAAGGAGACAGAAGGAGGCCCAGGCCCTGTGAGGCAGAAGCAAGCACTTTGAGAATGCGTTGAAGCCAGCTGCG
Seq C2 exon
AAAATTGTACAAGCTGGAGATAAGGACCTTGATGGGCAGCTAGACTTTGAAGAATTTGTCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTGTTTAAGAGTTTGGACAAAAAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-'3-7,'3-5,5-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(0.1=0.0)
A:
NO
C2:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTGCTCCCGGTGGTG
R:
AGTCTAGCTGCCCATCAAGGT
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)