HsaEX0059046 @ hg38
Exon Skipping
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128068201-128101222:+
Coord C1 exon
chr9:128068201-128068580
Coord A exon
chr9:128099275-128099385
Coord C2 exon
chr9:128101096-128101222
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGTTTCCCTGCTACCCCCAGTGC
3' ss Score
6.23
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGCCGGCGTCTCCGAGCCCGCGCTCCCAGCTGCAGAGCGCCTGGCTTGCCTCCCGCGCGGTCACCGCCGGCCCGCCGCCCCCGCTCCCGCCCGCGCCCGGAGCCCCTGCCTCGCGCCCGATGGTGAGCAGTGTGTTGTGCCGCTGTGTGGCCTCCCCGCCGCCGGACGCCGCCGCCACCGCCGCCTCTTCGTCTGCCTCATCGCCGGCGTCCGTGGGGGACCCCTGCGGCGGCGCTATCTGCGGGGGCCCGGACCACCGGCTGCGCCTGTGGAGACTCTTTCAGACGCTCGACGTCAACCGGGACGGCGGCCTGTGTGTCAACGACCTGGCGGTGGGGCTGCGGCGCCTGGGACTGCACCGCACCGAGGGCGAGCTCCAG
Seq A exon
TGCCCACTGTGCACCAAGGGGGATTTGCAGATCCAAGGAAGGAGACAGAAGGAGGCCCAGGCCCTGTGAGGCAGAAGCAAGCACTTTGAGAATGCGTTGAAGCCAGCTGCG
Seq C2 exon
AAAATTGTACAAGCTGGAGATAAGGACCTTGATGGGCAGCTAGACTTTGAAGAATTTGTCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTGTTTAAGAGTTTGGACAAAAAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.091 C2=0.019
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.1=47.1)
A:
NO
C2:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGTCTGCCTCATCGC
R:
AGTCTAGCTGCCCATCAAGGT
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development