HsaINT1041858 @ hg38
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128091464-128101222:+
Coord C1 exon
chr9:128091464-128092089
Coord A exon
chr9:128092090-128101095
Coord C2 exon
chr9:128101096-128101222
Length
9006 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ATGTTACCTTTCTTTTCTAGAAA
3' ss Score
10.5
Exon sequences
Seq C1 exon
GCGAGGACAGCTGAATAACTGGGAGCTCGAAGTTGCTTGCTGCCTCCGGGAGTGGTCTGCTTGGCTGTCGCGTTTTCCTTTTCTTTTTTTTTTTTTTTAAAAAAAAGCCAAACGTTTGCTCACCATCACCTGCAGAAGTGAGTTTTTATTGAAGAAGCTCCAGCTGCTTTCTCCTTATTGCCGGCAGCCTGGCAAGCCTCCCTTAGAGTGAGCTACTTCTCAGGCCGGGCACGACAGCAGTGCTAGCACATTTGAAAAAGCAGGAAACCGCCCCTGCATGCAGAGCTTCCAGCCTGAGAACCCCAGGCCCGTCCTCCCAGCAGCTGTGTAGCCAGAGAGCGTTGGTACTGTGGTCACATCCCTCAAAAGTGAACAGTCGCCATCAGAGGCGTTTGGAGGAGACCGTGATGTTGCAGATGCTGTGGCATTTCCTAGCTAGCTTTTTCCCCAGGGCTGGGTGCCACGGCTCCAGAGAGGGGGACGATCGTGAAGTCAGAGGCACCCCAGCCCCTGCCTGGAGAGACCAGATGGCAAGCTTTTTGGGGAAACAGGACGGAAGGGCTGAGGCCACGGAAAAAAGACCCACCATTTTGCTGGTGGTTGGACCTGCAGAGCAGTTTCCTAAG
Seq A exon
GTAATGTTGGCCTCAAGAGGACCTCCTAGTTTAGGGCCTGGTCTGGGATCATTTTCCTGGGGAAAAAACGAGTGTGGGGAGGAAGGGAGAACTCACAACGTTAGTTCGGGGTTCAGGGAGAAGTGGTAGGCAATGAGGAAGCCCACAAATGCAATCTAAAATCTTTCTGTGGCCCCTGTGAAAGCTGCATTACCCACTGCGAGCACCCCAGTGTGGCTGTTGAGGGAAGGAAGGTTGCAATAGACTTGCCTTAGGATTTGTTAGTTTGGCTGAAGAAAGCCATTTGAAAGTGAGGGGCAGCCTGTGAAAGTGTGCCTTAGCTTATCCGAACAGCTCAGGAAGGGCGAAGCTAAAGGGGCGAGAGAGTGTGCCTCGACCGTGGAACCCAGTTGCTTGGAGCTGTGGGGGTGGTCTTGGCATCCTGAAGGTCACAGTCCCCTTGCCTGGGTCCGACCCATCTCTCCTTTGGGTCTGGGAGGAAGAGTGAAGGCATGAGACTGGGTCCGAGGAGAGGCTGGAGTCATGAGGCGCAGAGGCTGGTGCCCCTCTGGAAATGACTGCGGCCGCTGCGGGTCTGCCAACTGTGGGGTCTTTCATCCTTCCTGAGCCCAGAGCGTGAGTTACCATCCTCACAAGAGCCAAGGTAAGTGGTAGTATCCCCATTTCGTAGATGAAGAAACTGAGGTGCAGAATGGTTACATTATTTGCCCAGGGTTAAACAACTAAAGAGAGGTGGAGCTGAGATTTCACCCCCAAATCCTTGTCCTGTGCTGCCTCGTTTTCCCCTTAGGAAAGCAGTTTTTAAGGAGACTAATGGAGTGCTCAGTATTAGAAAGGAAATTGCCACTTGGCTCAGATTTCTCCTCCCTGCTGTAGGAGTGACCTCGTTCACCTCCTGAGCTTTGGTTATTTTCAATCTTTTTACTTAGGAGAAAAATCAGAGAAGAAAAGGAGATTCTGCCCGTTTGGCACATTATAGATACCACAGAGATGTTAAGATGAATTGCTACATTTAAGAAATAAAAGCTCATTTTGCCTTTGCTACTAGGGACTTTTGATGTAATAACATTTGCAGTCATGTGGGCACTGGGGAGAAGTCTTCGTCTTTGATGGGTTCCTTCTGAGCAAAGCAGTGGGTCTCTCAGAGACTGTTATGCCTGAGATGTCTTTGCTTAATATTCAAAGAGAGGGTGTCACTTTGTACCTTTTGATTGTTTTAGACAAGATTGGAATGGCTGTGGCACTAGCTTTGTGAGGAACTTTTATCTATAGACCTGCTTGCCTTATTACTACCTCGAATGGCCGGCTCCTTTTAAAATCACCTATTTTTGTCTTTAGCAGTTAACTGCTCTATTTTTCAGCATCATACAGTACCCCCTTGCCAGCTCTCCCCCCAGGGACTGCCTAGGATAGGACTGTCTGTTCTGAACAGCTTAGTTCCTGGCCTGCAGAATCAAGAGACCCACACCTTTTACTGGCTGATCCCCAAAAGAGAGACAGTTCAGCTGGCTGCAAACTGGGGGAGCCCCAAGTGGGATATGGGGCAGCTGGTTGGGCTTGAAGCCAGAGAGAAAGCAAATCTGAGAAGCATAGACTCTCAAAGCAGATAGACCAAGAACTGGAGTAACAGGAACATGGATGCAGCCCGCATCCTTTTCCAGAACAGTGCTCTGAAGGTGTTTGGGGTTTGTGATCACTGGCTGATTGGGGCTGGCCTCACCAAATCACAAAAAGGACCTCCAGAATGTTCTGGAAACATTTTTGAAAAGTTCACTTTAGGCCAGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGTCTGAGGTGGACAGATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGCGTGCCTGTACTCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGCTTGAATCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCGCTGTACTCCAGCCTGGGTGACAGAGCAAGACTCTGTTTAAAAGAAAAAAAGAAAAGTTCACTTTGGTTCTCGGGCTTCTCAGTGTCCCAGAAGCACTACTTTGTTTTGCTCTCACTTCCCCTGTTTAAATATGTCTGCTAGTGAGTCAGGTTCCTGCAAGCTTTTATTCTAGGAACTGTTCCAGTTTTTCCCTTTATCTTTGTCTTACAGTTAATCTTCAGTTGGAGAAGAAAGCCATTACTCTGGAGTGGGAGGTGCCCTCAGCGGCATTCAAGCTTTCAAATCCTGAGGGGCTGTCTTCTCGGAAGCACAGAGAATTTTGCTTATTGTGTGTGTAACTGCCAAGTGTAGGCAGGTTTCATTGGAAACTGGCTACACTAGGCTGTCATGGCAACCTGATCATCAAATGACACTGTGGCCACAGCCGCCAATGAGGTTTGAGAGCCTTAAGGGTGGGTGGGGCTTGAGCGGCTGGATGCTGGCAAAGCTTCCTCATATTAATATTTCTGGCTCAGCCTGAGTCATTGCAGAGGAGGGGAGAGGAACTTTCTGACCTAATGCTACACTCCCAGAGGCACTGTACCTGCCCTGTTCTTATTCATGGTATTCCGGCCTTTACCTGAAGCACCTGCTTTCTTCTGGCATGTAACATAGTGGTAGAACAAGGAAAGCTTTTGGTGGCATTGGCAGATTTGCTGTGAGAAGATGCTCAGGAGAGGAACTGCTACTTTATAGATTAATTGCAATCTGATGCCACTGAATCCTAAGGGACCTAGTGTTGCTGTCACTGTTTCCGAATACTAGTCATAGGAATGGACATCGGAGGAGCTGAAACAGATGAGGGTCTGTGCCACAAAGTCAGAATAATAAAGAGCAGCGAGGCATCGCACACAATGCGCGTTGTGCCCAGATCTTGGAGTGTCAAGAAGGCCGGTGTGAAGCATCAGGGCTGAAACCCGAGGCCTGCTTTAGTTCCTCCATAATCTAGTTCTCACAGAGGCATTCAGAAGCTGTGACACAAACACCGTTTTTGGTTGTATTTAGCTAGGGCTCAACTTGCTCAAGTTACACCTTTCCCACACACCTGCCGCCTTCCAGTATGAGGTATCACCTACTGTCTGGCTTACCGGCATCCTTTGGGAACTGAATACTAAAATCTGTTTTGGGTGCTGTTTGAAGTGGATGTTGTAACAAGAACCCTGGGTGCAAGGCCCTGCCCTGCCCTTGACAGGCTTTGGGAATTGGGCAAATCAGGTCGCCTCTCCCAGGCCTGTTTGCTCAACTCGGAGATTAAGGGATGATCCCAGAGCCCCTCTGGGCCCCCACAGTCTGCAGTTCCAGGAATACAGCAGTTGTCCTGGACACTAGCACCTAGAGATGGGCTTATTTGGGTAGAACTCTCCATTTTTATATGAACATGGAGTCTTGAGTTACCTGTGAAACTCAGTAGGATGGATGATTTAAAAAACCAAATGCCAATTGAAGTTTATCCAATGAAGACATTCCATGAGACTCAGTCACAGCAGCAAATAAGTTAGAACCCTTTTAAAAATTAGCTGGGTGTGCTCGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGTAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTTAGGAAAGACAAAGAAAAAAGAAGAAGAATACAGGTTTCACTTTTATTTAGTATCATTTTCAAATCTCAGATTTCTTTTGTTAAATACATTATAAAACTCAATGGTACAGTAATATGTGCCATAATTATTTTTAAAATATACTTTAATAGAAAGTGAAATCTCCAATTGAACTTATTCAGTCAAAATATTTGCTTTTTTATATTAGAATGACTGCAGTCATCACTAAAATGAGATATTCAACAGATCTGTATAATTTAGTTTCAGAAGCAAACAATAATTTAACAAAGGAAGACCAGCATTTTTTTTAATAGGGCAACATCTCATTTTATAAAGTAGAGTGAGCATTCCTAAAGACCAGCATTTTAGGGTTCAGCTTTTATTTATAAATGTGAACCTCCTTTAAAATAAAATAATAGAGGCTAGGCGCAGTGGCTCATACCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAACATGGTAAAACCTAGTCTCTACTAAAAATACAAAAATCAGCCAGGCGTGGTGGTGGGCGCCTATAATCTCAACTACTCGGGAGGCTGAGGCACAAGAGTCGCTTGAACCTGGGAGGCAGAGGTTGCAGTAAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAAGAGTGACAGTCTGTCTCAAAAATAATAATAATAATGATACATTATCTTGTCCATTTGAATATAATGCCCTGACAACTCTATTTGCAGATGCTCAGAAAAATAGGCCTTCATCAAGCATGGTTATAAGTTTGTTTCTTGGGGTCTTAGAGCCCCCTGAGCTAATTCACTCATTTGGAAGCTGTTCATGAAGCACCTTATTTGATCAAGGCAGGAGGTTATTTCCAGACAAGGAGGTCCAAGGGTTTGAAGTAAGAGCCTTCTACCTTCAAGGACCCTGGTGGTAGAGATAAGAGGCGTGTTAAAATAGCCCAAGGCAGAACATTCTGGATTGGGCAGCTTAAGAGATAGCTGAGTGTCATGGATTTAGCGGAGGCTGAGCAGGAATCTGCCTGGATAATCCAGTGCGACCTCATAGGATCCGTCACTAGGGTAGCCCAAGACCTGTTCTCACAGACTCGTTATCAGATCTCTGTTAGAAGGCCCAAATGTCATATCACTTGTCATAATCTCTGTTTCATAATGTTGTGTGTAAGTATCAACATCTTGTAACACCCTCTTTACGAGTTAACAACAAGCGTTTTAGTGCATTAAAAAGTCCTTTTACTTCTGTGATCCCCAAGTAATAACTATCCATTTTTATCCATCCCGGTAGTGGGAAGATATAGTCTATATTAGGAAGTGGCGCACTGTAGAAGGAACAAGGGTGAGACTGAGCCTGTTCTCATCTTGGTGACGTGGTCTCTTCCTCCGCAGCACGAATCTGTGGGGAAGGAATGAGTGGAGAATTCAGGCCGGCCTGCAGAGAGGGTCGTCCTGCCCTGAAAGGGTCGTTCTCGAGCTGTGTTGCCCAGTGAAGTTTCCGCTGTGGCAGAAATGCCCAGTGACTATGCGTGGCTATCCTGGGGAACTGAGTTTGTAATTTCATGTCATTTTAATGAATTTACTTTTTTGCATGAGACACAGTTTCACTCTGTCACACAGGCTGGAGTGCAGTGGCACAATCCTGGCTCAGTACAACCTCCGCCTCCTGGGTTCAGGCAATTCTCGTGTCTCAGCCTCCCCAGTAGCTGGGATTACAGGCGTGTGCCACCACGCCTGGCTATGACTTTACATTTAAAAAGCTTCTGTATTGAACAGCAAAGTTCTAGCTGTGACTAAGACTGGGCTCCTACGTGTTCTGAGCGGACGTGGGCGTTGAAGACTGTGGGTCTCATGTGAGGCCTCGACTGACCCCAGATTGATGCTTCTGGGGAGTCCTTTGGCATGGTGTCCTCTTACCAACCCCATCATGTCAGCTCCTGGGCACTCTGGGGCTCCTAGGTGAAGGCTGGTGCTCACATTGCAGAATGGCCTGGAAGAGGTTTCAATGCAATGTGGGCTGTGGAGGGCTGCAGGTTCCCTGGAGCAGGAGCCAGCTAGAACTGTGCCTGGAGCCGTGTGTGGCCAGGGCAGCTCCCCTGTGGGATACATGGGCCCATAGGGGGGTCCACTTTCCAGGGTGGCTAGGCACCTGGCTCTCGGCCACCCCTCAGCCTCCTATCCTCACAGCTGAACTGGGCCCGTTTGCAGTGGCAATCAGCTCTGTCTCTCTCCAACTACTGATTTTTTGGTTGGGAATGATTTACTAAAAGGAGAAAAACTGTTGTGTGACACGTTTGGGGACCTTGTGTGAAAGCAGCCATAGGCTGTTTGTTCATCTGAAGGGGTTGGCAGCTAGAGGGTGAAGGTTTGTTTGGGCTCTGTACCTGGTACCCAGGCAGGCAGAACGCACCACCCGGCCTCTTCTCCAAGAGTTAACTGCAGGGAGGGAGCGGTGACGTCAGCCCTGATCTTTGTGCCTCTCACTTGAGCAACCTGATGCCACCTTCTCCCCCGGGCTCTGTGTTCATTGGCTGTTGGCAGGACTTGCCGTGGGAGGGCTTTTTTCTTTTTTCAATTAAGTAAAAGGGCAGGGCTTAAGCAGCCAATGACAGCTGAGGCCAGGCTTGTCTTATGCAAGTTTCCCGGGACCGGCAGCATTTAGGGAACTTGCTCCCGGTGGTGAGGGCAGTGGAGCACCCAGCAGGCCGCCAACATGCTCTGTCTGTGCCTGTATGTGCCGGTCATCGGGGAAGCCCAGACCGAGTTCCAGTACTTTGAGTCGAAGGGGCTCCCTGCCGAGCTGAAGTCCATTTTCAAGCTCAGTGTCTTCATCCCCTCCCAGGAATTCTCCACCTACCGCCAGTGGAAGCAGGTCTGTGGGGTGACCGCGCGGAAGGGAGAGGCGCATTCAACCGGTATTTGTTGAGTGAATGGCTGAGCATGCATGAACCATCCCCCACTGAGAGGAAAGAATGTCTGAAATGTAGCAGTTTTTTCCCATTGCCATGCGGCTATGGCCGGCACGTGTACGTCACAGGAGTGACCGGTTTTCATGTGACTTCCCAGGAAGGCTGGAATTCCAGCGAAGGCTGTTGTGAGAAATGGACTTTCAGAAAGGAAATTCCTTTTGCTGGAATGAGGGGGGTGTTCCTGAGAAGTACAGAGCCAGAAAGGGACCTGGGGGGCAGGCCAGTAGTGCATGGGAGGAGAAGGCAGGGAGGCCCAGGAGTTGAGGGTGCTGCGTGGTGGAGCTGCCCGTCCCTGGTGTGGGGGTGAGGGAGCCTCCCGCCTTCTCGACTCTCAGACATCGCTGTGGAACAGGGCCTGTGTCTGCCCTGAAAGTGAGGAAGCCGAGCTGCAGAGTCCGGAGGCCCCTTGCCACCTCGGCTTCTCGGTTAATCAGTTTCCCTGCTACCCCCAGTGCCCACTGTGCACCAAGGGGGATTTGCAGATCCAAGGAAGGAGACAGAAGGAGGCCCAGGCCCTGTGAGGCAGAAGCAAGCACTTTGAGAATGCGTTGAAGCCAGCTGCGGTGAGCACACCCTCTGCTCTGGGTGTCTGCGACAGCACCCACCCCAGGGAGGCATGTGGCTCACCCTGGCAGCAGGCGGCTGGGTCCCAGAGGGCTCCATGCCTGATGTTCGCCTCCTGCCTAAATGGCTTGTCCACTCTATTTCCATTCCTGTTAGAGATTTGGAGCAGTCACCCTATAGGTGATTTATGTCACTCTTGTCTGAGAGCACAGATGTCCACAGGAAGTTAAATGTAACCTCAGCAGATAAAATATGTACCTGCATCTGTCCTACATTCCAGCCACGCCCCTCACATTAGCCTTTTGATCGCGCCAGGTCATGGGGTATCTGTTCAGGCCTCCCTGCCCCTGACACCTTTGGCAGCTGAGGAATCACAAGGCGCTGTCAGTAGTGTGTCTAAGAGAGAGGCGCGGTGGTGATCCTTTGAGGACGCGAGCTAGCCAGTGGGCCATCCATTTCCAAACCCCAGCTGGCTGTCAGTTGATTTCTCCCAGTGAGAAATCCGGAGGACACAGGAAGACTATACCATCTTCCTTGGGAGATTCTCGGTCCCAGTTTTGGGTTCCGGATTCAGGGCGTTGCTGAGTTGGGGTGACTCACTTTCATCCCCCATGTTCTGAAGGTTAGCCTTGAGGGTGGCGGCAGGATGTGCAGGGAGGCGGCTTGGGAGGACCACGGCCCAACTTGCATCCCGCCCACCACTTCCCTAGCTGTCTGACCTTGTGTAAATGTTTAGGCTCTCGGAACTCCTGTTTCCTTCTCTGTAAAATGGGGGAAATGACATTTCCTACCTCCTAGAGCTGTTTGCGAGGGGGGTAAGTGGGTTGCTAGAAGTAAAGCATTTGGCACGCCCTGCGGCCGGTGCTAGGTGCTGGGGAAATGTGTGCTCTCGTGGAGCTGTCCCAGTTGCCAACCATTAACAGCTGCTGAACAAAGCCCACCTCCTGGGAGGCGGGGGCGGGGGGGGTTACTTTTGGAACCTCATTGCCAAGGAACAGTCTCTCAAAGCCTTCTTGGGACACTAAAGTGCTTTTCAGTGAGTGAGCGGGAGAGCCAGGGCAGCTCTATCACCTGGCTTCCCTGAGAGCAGGGACTGGCAGTACCATCATACACATGCCCTTGGCTCCTTACACTTCCCCGGCCTCGGGTGCTGTGGCAGAGTCTGGCTCTGCCCCCGATTTTCACCTGCCCACCAAATTATTCTCGGACCAATGCCAGTTTTAGGAGAGAAACAGCGAGCTGCAGAGTTCCTGTCAGAAACTGGACTCCATGGCCATCCCCAAGTCTCAGCAGGGAGCATGTGTGGTTGAAGCCTGGGTCCAGGGACCCAGGGACGGCGCTGCAGCGAAGCCACCCTGCTCACCCTGGCTGTACGGCACGCAGGTCTTCAGACTGAGAAAGTGCCCAGCTGTCCCTGTCGGCCTCTGTCCGGAGGGCTCTTCCCAGGCTCCTTGTTTCCTCTCTGCTTGAGAGGGAGACAAGATTGGCCCTTGCCTGGGTTCTGGCCAGCACCTGGGGTTCTAGGTGGTGGCTCTGGCATGTAAGTCGATTGCCATGGTGGCTCTGAGAGTGGAGCAGAAGCATCTTGGGTCCTTGGGGCCAGCTCTGCTCGCAATTAGTGAAGTCATTGCCTGGGGATGGGGCCCCACAAGGGACAAGGAAAGGCTGGTCCAGGAGCCAAAAGACAAAATGTTACCTTTCTTTTCTAG
Seq C2 exon
AAAATTGTACAAGCTGGAGATAAGGACCTTGATGGGCAGCTAGACTTTGAAGAATTTGTCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTGTTTAAGAGTTTGGACAAAAAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339:ENST00000373066:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(0.1=0.0)
A:
NA
C2:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains