BtaINT0134637 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98750459-98753133:+
Coord C1 exon
chr11:98750459-98750660
Coord A exon
chr11:98750661-98753006
Coord C2 exon
chr11:98753007-98753133
Length
2346 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TCTTTTCTTTTCTTTTCTAGAAA
3' ss Score
12.01
Exon sequences
Seq C1 exon
AGCATTCCCGGCGTCCACGCCGCCTGAAGCAGCTCCCGCCAGCATGCTCTGCCTGTGCCTCTATGTGCCCCTCATCGGGGAGGCCCAGACCGAATTCCAGTACTTCGAGTCCAAGGGGCTTCCTGCCGAGCTGAAGTCCATCTTCAAACTCAGCGTCTTTATCCCCTCCCAGGAGTTCTCCACCTACCGCCAGTGGAAGCAG
Seq A exon
GTCTGTACTGGGATGCAGAAGGCAGGCAGGCAGGCATTTCATCAGCGTTGACTCAGCGAAGGCCCGAGCTGGTAGAGGGTCCCATGCCTCCGACTCGCTTGATTTCCAGCCGTGCCAGTTTTTCCCCAGCAGGCGCGTGGCTGTAGCCGGCTACAGGGCTGCGTCACGGGAGAGACTGGCTCTCATGTGACTTCCAAGGGAGGCTGGAATTATAGGGGAGGCACTTGTGGAAGAGGGAAAGGAATTTTCTTGCGGAGAGTGGGTGCAGGGCAGTGCAGGGCCAGAAAGTGGGGGCACGGTCTAGCTGCTGCGGGGGTCTTTCTCTGAGCTGGGGGGCAGAGAGGGGGAGGGCAGAGGCCCCTCATTGGAGGCACAGGAGTTGGAACTGTGGCTGCAGAGGCTGGAGGTGACAGGACTGTGCTCTGGGTGAAACAGAACAACAGGCAGGGGTGAGGGGACCTTCCTAGGGGGTCTCTTTGGAGCCAGAGGCAGCAGAGATTATTACCATTTTAAATATGGGGAAACAGCTACAGCGTCTGAGAGGGTCGCCTCCTCCTACAGGGACACCCCAGCTTCGCCGGTCATCAGACCCCTCGCTGTCCCCCGGTTCTCGTGGTGGCAGTGGAGGTCAGAGAGTGTGCAGGGGGTGATGACGTGCTTATCCTAGGAAGGAGACCAGACTAGGGTAGAAGCGAGGGTTTAGACTGTTTGAAACCAGCCGCATGAACATGTCCTTGGGTTGTCTGTACCCCGGCACCCACCCAACAAGGCACATGGATCACATTGGTGCCAGAGCAACGCAGATTCCAGCGAGCTTCGTTCCTCACATTCGCCTCCTCCCTAAATGACATGCAGGTTCTACTTCCACTCCTCTCATAAGCTAGGATGATTACCTGTACGTAATCTGTGTCATTCTTGGTGGAGAGCAGAAATGCCTGCAGGAAGTTAACCCGAGTCCAGAGAGTTGATAGAACATGTACCAGCGTCTGTCTCACATTCCAGTCACACCCCCGAGCTGGTCTTTGGATCATGTTAAGTGACACAGTATCTGGAGAGGACCAGCTAGCCAATGATCCATCAGTTTCCAAATCCACTAGCTCAGAAGACTTGGAAACCCACAGTGGTTTGTGGATAGAGGATGTTATTTCTCACTGAGAGAACTGGGCAACACGAGGAGACTATAGCCATTTTCCTTAGGAGATTTTTCGGTCCTAGTTTTGGGGTGTTGCTGGGTTGGAGTGATTCATGTATGTTCCCCACCTTCTTGAGATTAACCTTTACAATGGCAGCAGGCTCTCCCAATGGGGAGGTGACTGGAATCCAGCAGGCCTGGCTTGAATGCCACCTACCACTTCCCTAGCTGCATGGCCTTGGATAAATTACTTAGCCCTCAGAACTTCTGTTCTGACTCTGACTCTGAAAAGTGAGGGGAATGCTAGACCCCCACCTCTTAGAGCTATTTGCAAGGATTCACCGGGTTACTCAAGGTAAAGCATTTAGCAGGACCTGGGGCACAAGCCAAGTGCTTGTGCTTTTGTGGAGAACTTCCAGTTGCTGAGCATCCAGAACGGGCTGCAGTGCTTGAACCAAGCTCATCTCTAAGCGCAGGTGCAGATTTCTGGACCCTCACTGCCAAGGAAGGGGTCTCTTAAAGGCCCCTTGGGTTACCGAACTATTCCTGAGTCAAGCTGCCCTGCTTTCCAGGGCCTGGTTAATAAGGAAGCTGAGGTTGGTTACAGCATCTGGCTCCCCCGAGATCTGAGACAGTCAGCGCCTTCGAGCTCAGGCCCAAAAATAGTTCCTGTGGGTCGTAGCACTTCCCCAGCCTCCACAGTTCTCTCTGCAATGCCAAGCAGGCATTGGCAGGGGCCAGCTCTGCCCTGTACCTTTACCCGGGTCGCCCCCAACTGTTCTTGGGCCAGTGCCACTTTTAAGGATAAAAGCGCCAGCTGCAGAGTTTCTGCTGAAATCTGGAGCTCCGGGGCCACCCTGCATGTGGGCAGAGGGCATGTGGGGCTGAGCCCTGACTCCAGGGACAGTGCCGCAGGGAGCCGAGCAGCTAACCTGGTGAAACCAGAAAGGCTCAAGCCCACCAGTGTCGGCCTCTGTCTGAAGGGCTTCTCTCGGGGACTGATTTTTTTCCCTTGTCGATCGCGAGGGAAGCATGGCCGGCCCTCGGGCATCCAGGCGGTGACCCTGGGAGTGGAGGAGGGGAAGTGTCTCGGGTCACTGGGCCACCTCATGGATGAGCCGTTGTTTGCCCAAGGACGGGGCACCACAGGCGGGAGAAGCTGGTGTTTGAGCCCAGGGGTGAAACCTTTCTTTTTCTTTTCTTTTCTTTTCTAG
Seq C2 exon
AAAATCGTACAAGCTGGCGACAAAGACCTGGATGGGCAGCTAGACTTCGAAGAGTTCGTCCACTATCTCCAAGATCACGAGAAGAAACTGAGGCTGGTGTTCAAGAGTTTGGACAAAAAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912:ENSBTAT00000015802:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(0.1=0.0)
A:
NA
C2:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development