RnoINT0136929 @ rn6
Intron Retention
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11449400-11452529:-
Coord C1 exon
chr3:11452271-11452529
Coord A exon
chr3:11449527-11452270
Coord C2 exon
chr3:11449400-11449526
Length
2744 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TCCTTGCTTTGGTTTTCTAGAAA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GGCATATCTTGTGCTAGTTTCCCAGGAACCCGGCATTCCCTACTCTTGACTTCTGCCGGCACTTGCTCCTGGTGGTAGCTGAGCACCGGGTCTCACCAGCATGCTCTGCCTGTGCCTGTATGTGCCCATCGCTGGAGAGGCTCAGACTGAATTCCAATACTTTGAGTCCAAGGGGCTTCCCACCGAGCTGAAATCCATCTTCAAACTCAGTGTCTTTATCCCCTCTCAGGAGTTCTCCACATACCGCCAATGGAAGCAG
Seq A exon
GTCTGTATGCTGAGCTGGTGCCAGGAGGAGCAGGCAGGGACTGGTTTTTGAGTGAAGGGATGAATGGTACCTAGGCATGACTTCCTGGCCTGGAGGGAAGAATGTCTGAAATGTGGGTGTTTCCCCATCCCTCTGTGGCTGTAGCCAGCAGTTCTATGTCACTGTCATGGCAATGGCTGGTTTTTGTGTAATTTCCTGGACTGGGAGGGAAGGCACTTATGGGAGATGAAATCTCTAGATAGGAGTTCTTTTCCTTGGCTGAGATGAAGCTTCCTAAAATGTACAAGATGTCATAGAGGCCTGGGCTGTCTCACTGCCATGGGAAGTTTTGTGACTCCAGGGCAGGGTGTAGAGGCTAGAATGTTGGGCAGCCTTCCTTCCCACTTGGACTTTCAAGTGCTTAGGTGGCCCAGGGAACAGGATGCCAGCGGTGATCCTGGCCCTTGTGTGATGAGAAATGGAACTTGACCTTGGGGTTTGCTTTGCACTAAATTTCATGTTGTCCCCCAATGCTGGTGTGTTGTTTTGCGCATCTCAGAGTGGAGACACACAGAATGGAGTAATTGCAAGGGGGGAAGAAGCAAGTCTTCCTTCCTCCCCGTTTTTTTAATGTCTCTATGTAGCCCCGGCTGGCCTGGCACACAAAGAGATCTGCCTTTCTCTGGCTCCCTGTGTTGGAAGTTAAGCCATATGGCACCACTTGGCATTTCTTCAGACAGGGTCTTGGTGTGTAGACCAGGATCACCTCAAACTCTCAGGAATACTCCTGCCTCAGCCTCTCTAGTGCTGGGATTATAGGTGTGCACCCCCACTCCCACAGATGCAGGACAAACTGTTGGGGAGTATTTTTAAATAGAGTACAGTTAGCACAGTTGTGGGTGGTCTGTGTCATGGGGCACTGCCCCAGAACAGAGTACTTTGGTGGCAGGGCAAGAGAGAGAGACTTTTTCCTTTCTACTTGACATAATGGGTGGTGACCCTTGGCTAAGAGCACAGATGTTGGTGAGAAGTTAACATAATCCCAGCTGACAGATAAGAAGTGCTCCATCTGTCCCACATGCCACATGTCTCACCCAAACATTGTTGGCTCCTTGGGATATATGTCTACCCTCCCCCAAAAGTCAGTGGCTAAGTAAGAGGGAAACCATGATGACCGCCTTCTGGGAATGCAAGCTAGCCAGTGGTCCATCGGTTTCTAAAACTCTTTGACCTAATGTGTTGGTTTGACTAGTGAATGGATTTGTCCATAAGAGAACCAAGAGGCATTTTCTTTAGGAGATTTTGTGTTTTGGATATAAAGTGCTCTTCCCAATAAATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTGTTGATAGACAGACAGACAGACAGACAGACAGAGGTATAACAGAGTCTCATTCATTCTGTAGTTCTGGCTGGCCTAGAACTCACTAGATAGAACAGACTGGCCTTGAATTCACAGAGATCCACCTGCCTCTCTGCTTTTGGAGTTCTGGGATTAAAGGCACACACCACCACTCCTGGCTAAGTGTAATTAAATGTAATGAAGAACAAATGAAAACTTAAGTGCTTCTGTGCTGAAATGACCGCTATTTCTCCCAGAGTTCTCTCTGTCTTGAGATTAACCTTTAGGGTAGCAGAAGGTCCTTCAGGAATGCCCATGATGGCCCTGGCCCTGGCCCTGGCCTCCTGTGAACACCATTCTCTAACTGCTGTTCCTTTGCTTTGTAACATGTGGGGAGGAATGGGCTATCCTCTCACTGGAGAGAGCAGTAAGACCTTTTGCATCCCCACCCCCCATCCCCTGCTGAGGGGAGAACCTCCAGCTGGTGTTACAGCCTCTGTGCTAGCCTCAGATGGTGCGGCTGCAGATCAGGGTCTCTTAAAGCCTTAGCCCCCTAAACTAGTAAAGCTTACCTGGCCTTCAGTGCCTGGTTGGGAATCTGGGCTTGGCTATATCTTGTATCCCTGTGAGACTAGGGACCCGACTGGCAGTGCCCAGTGCCATCAAGCCTGAGCCCAAGAATAGTTGCCCTTGGCTCCTCCTGTCTGTCTCTATACCCTCCAGAGTGTTCCCTGGCAACGTTTCTGCCAAGTAGGCATTGTCTGAACCTTTACCCTCGCCACCAAATTGTTACTGGGCTAATGCCACACGGGATAGAGCAAGTAGCAGGGTTCCTAAGGGACTCTGGATTCCAAGGCTCTCCCCAGCTCTCAGCCAGGAGTGTAGGTTGAAGTCTGCCTTCAGACTTCTGTAGGAGAGCCAAGCCACTGGCGCTGGCTGTGTAACAAGCTGGTCTGCGGAATGTTGGAGAGAGCAAGCACCTGGCTGCCCTGCTGGCCTCTCTGAAGGCTTTCTCAGAGGAGTATTTCTTCACCAAAGCAGAGTGGGCCCTTGCTTGGCTTCTGGATAGCCTTTGGGAACCAGGGTAGTGGCTCTGGTGAATGGGTAAATTGACATGATGCGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGGAAAAAAAAAAAAAGAACAAAAAAAAAAATTGACATGATGCCCTATGATTCCCACCGCTTTTACATCCTTAGAGAGAGGACACCTTGGGTCATTCTGGAGAACAGTTATTTCCCTGTTGTGATAAGAGTCTGTTGAGCAACACCTAAAGTCCTTGCTTTGGTTTTCTAG
Seq C2 exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTCGAAGAGTTTGTACATTACCTCCAAGACCATGAGAAAAAACTGAGGCTGGTGTTTAAGAGTCTGGACAAAAAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338:ENSRNOT00000020206:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(0.1=0.0)
A:
NA
C2:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]