HsaINT0151756 @ hg19
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]
Coordinates
chr9:130860836-130863501:+
Coord C1 exon
chr9:130860836-130861047
Coord A exon
chr9:130861048-130863374
Coord C2 exon
chr9:130863375-130863501
Length
2327 bp
Sequences
Splice sites
5' ss Seq
CCGGTATTT
5' ss Score
4.59
3' ss Seq
ATGTTACCTTTCTTTTCTAGAAA
3' ss Score
10.5
Exon sequences
Seq C1 exon
GGCCGCCAACATGCTCTGTCTGTGCCTGTATGTGCCGGTCATCGGGGAAGCCCAGACCGAGTTCCAGTACTTTGAGTCGAAGGGGCTCCCTGCCGAGCTGAAGTCCATTTTCAAGCTCAGTGTCTTCATCCCCTCCCAGGAATTCTCCACCTACCGCCAGTGGAAGCAGGTCTGTGGGGTGACCGCGCGGAAGGGAGAGGCGCATTCAACCG
Seq A exon
GTATTTGTTGAGTGAATGGCTGAGCATGCATGAACCATCCCCCACTGAGAGGAAAGAATGTCTGAAATGTAGCAGTTTTTTCCCATTGCCATGCGGCTATGGCCGGCACGTGTACGTCACAGGAGTGACCGGTTTTCATGTGACTTCCCAGGAAGGCTGGAATTCCAGCGAAGGCTGTTGTGAGAAATGGACTTTCAGAAAGGAAATTCCTTTTGCTGGAATGAGGGGGGTGTTCCTGAGAAGTACAGAGCCAGAAAGGGACCTGGGGGGCAGGCCAGTAGTGCATGGGAGGAGAAGGCAGGGAGGCCCAGGAGTTGAGGGTGCTGCGTGGTGGAGCTGCCCGTCCCTGGTGTGGGGGTGAGGGAGCCTCCCGCCTTCTCGACTCTCAGACATCGCTGTGGAACAGGGCCTGTGTCTGCCCTGAAAGTGAGGAAGCCGAGCTGCAGAGTCCGGAGGCCCCTTGCCACCTCGGCTTCTCGGTTAATCAGTTTCCCTGCTACCCCCAGTGCCCACTGTGCACCAAGGGGGATTTGCAGATCCAAGGAAGGAGACAGAAGGAGGCCCAGGCCCTGTGAGGCAGAAGCAAGCACTTTGAGAATGCGTTGAAGCCAGCTGCGGTGAGCACACCCTCTGCTCTGGGTGTCTGCGACAGCACCCACCCCAGGGAGGCATGTGGCTCACCCTGGCAGCAGGCGGCTGGGTCCCAGAGGGCTCCATGCCTGATGTTCGCCTCCTGCCTAAATGGCTTGTCCACTCTATTTCCATTCCTGTTAGAGATTTGGAGCAGTCACCCTATAGGTGATTTATGTCACTCTTGTCTGAGAGCACAGATGTCCACAGGAAGTTAAATGTAACCTCAGCAGATAAAATATGTACCTGCATCTGTCCTACATTCCAGCCACGCCCCTCACATTAGCCTTTTGATCGCGCCAGGTCATGGGGTATCTGTTCAGGCCTCCCTGCCCCTGACACCTTTGGCAGCTGAGGAATCACAAGGCGCTGTCAGTAGTGTGTCTAAGAGAGAGGCGCGGTGGTGATCCTTTGAGGACGCGAGCTAGCCAGTGGGCCATCCATTTCCAAACCCCAGCTGGCTGTCAGTTGATTTCTCCCAGTGAGAAATCCGGAGGACACAGGAAGACTATACCATCTTCCTTGGGAGATTCTCGGTCCCAGTTTTGGGTTCCGGATTCAGGGCGTTGCTGAGTTGGGGTGACTCACTTTCATCCCCCATGTTCTGAAGGTTAGCCTTGAGGGTGGCGGCAGGATGTGCAGGGAGGCGGCTTGGGAGGACCACGGCCCAACTTGCATCCCGCCCACCACTTCCCTAGCTGTCTGACCTTGTGTAAATGTTTAGGCTCTCGGAACTCCTGTTTCCTTCTCTGTAAAATGGGGGAAATGACATTTCCTACCTCCTAGAGCTGTTTGCGAGGGGGGTAAGTGGGTTGCTAGAAGTAAAGCATTTGGCACGCCCTGCGGCCGGTGCTAGGTGCTGGGGAAATGTGTGCTCTCGTGGAGCTGTCCCAGTTGCCAACCATTAACAGCTGCTGAACAAAGCCCACCTCCTGGGAGGCGGGGGCGGGGGGGGTTACTTTTGGAACCTCATTGCCAAGGAACAGTCTCTCAAAGCCTTCTTGGGACACTAAAGTGCTTTTCAGTGAGTGAGCGGGAGAGCCAGGGCAGCTCTATCACCTGGCTTCCCTGAGAGCAGGGACTGGCAGTACCATCATACACATGCCCTTGGCTCCTTACACTTCCCCGGCCTCGGGTGCTGTGGCAGAGTCTGGCTCTGCCCCCGATTTTCACCTGCCCACCAAATTATTCTCGGACCAATGCCAGTTTTAGGAGAGAAACAGCGAGCTGCAGAGTTCCTGTCAGAAACTGGACTCCATGGCCATCCCCAAGTCTCAGCAGGGAGCATGTGTGGTTGAAGCCTGGGTCCAGGGACCCAGGGACGGCGCTGCAGCGAAGCCACCCTGCTCACCCTGGCTGTACGGCACGCAGGTCTTCAGACTGAGAAAGTGCCCAGCTGTCCCTGTCGGCCTCTGTCCGGAGGGCTCTTCCCAGGCTCCTTGTTTCCTCTCTGCTTGAGAGGGAGACAAGATTGGCCCTTGCCTGGGTTCTGGCCAGCACCTGGGGTTCTAGGTGGTGGCTCTGGCATGTAAGTCGATTGCCATGGTGGCTCTGAGAGTGGAGCAGAAGCATCTTGGGTCCTTGGGGCCAGCTCTGCTCGCAATTAGTGAAGTCATTGCCTGGGGATGGGGCCCCACAAGGGACAAGGAAAGGCTGGTCCAGGAGCCAAAAGACAAAATGTTACCTTTCTTTTCTAG
Seq C2 exon
AAAATTGTACAAGCTGGAGATAAGGACCTTGATGGGCAGCTAGACTTTGAAGAATTTGTCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTGTTTAAGAGTTTGGACAAAAAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-SLC25A25:NM_001006643:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)