HsaEX0059835 @ hg38
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27452417-27484420:-
Coord C1 exon
chr3:27484079-27484420
Coord A exon
chr3:27483519-27483627
Coord C2 exon
chr3:27452417-27452498
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTCTCCTTCTAAGGAG
3' ss Score
7.43
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCTCTCCTCCTTCCCGCTCGGTCCGCCGGTTCGCTCAGTTCTAGCTTCAGGTTCCACGCCGCGGCCTCGCTCTCCTACTAAAGCCAGCCCAGCAGTCGCAGCGCGCACACGCACGCCCCGCGTCTCCCGCGCCCGGCGCCCGGCTCTCCCCACGCGCGCACACCTCGCGCACGGACGCACCCACGTTTGTCCTCGCGCGCCGGGGGCTCGGCGGCGGCGGCAGGGGCAGCGGCAGAAGCAGGCAGACCGCGCGGGGCAGTACCGTAGCGGCCGTCACGGGCTGGCCGGCCGGCCATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGG
Seq A exon
GAGGACGGCGGCTCCACCTGTCTCTAGCCCCAGGCAGTGGTGAAGAGCTGGTTGAATCTTTCCCCCTCTTTCCGAGTGTCCCCTCCCGCTCCGCGGTGCGCTTTGTTCG
Seq C2 exon
GGTCCTGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.872
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000425128fB6497
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCACGTTTGTCCTCGC
R:
AGTTCTTCTTTTTCAAACTTGGTGT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development