HsaEX0059835 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27500356-27525838:-
Coord C1 exon
chr3:27525558-27525838
Coord A exon
chr3:27525010-27525118
Coord C2 exon
chr3:27500356-27500482
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTCTCCTTCTAAGGAG
3' ss Score
7.43
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CCTACTAAAGCCAGCCCAGCAGTCGCAGCGCGCACACGCACGCCCCGCGTCTCCCGCGCCCGGCGCCCGGCTCTCCCCACGCGCGCACACCTCGCGCACGGACGCACCCACGTTTGTCCTCGCGCGCCGGGGGCTCGGCGGCGGCGGCAGGGGCAGCGGCAGAAGCAGGCAGACCGCGCGGGGCAGTACCGTAGCGGCCGTCACGGGCTGGCCGGCCGGCCATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGGGTAACGAGCAGG
Seq A exon
GAGGACGGCGGCTCCACCTGTCTCTAGCCCCAGGCAGTGGTGAAGAGCTGGTTGAATCTTTCCCCCTCTTTCCGAGTGTCCCCTCCCGCTCCGCGGTGCGCTTTGTTCG
Seq C2 exon
ATGGAATCTCGCTCTGTTGTCCAGGCTGGAGTGCAGTGCCGTGGCATGATCTCAGCTCACTGCAGCCTCCACCTCCCGGGTTCCAGCAATTCTCTTTCCTCAGCCTCCAGAGTAGCTGGGGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCCACGTTTGTCCTCG
R:
TGCAGTGAGCTGAGATCATGC
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)