HsaALTD0006038-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27493908-27525670:-
Coord C1 exon
chr3:27525570-27525670
Coord A exon
chr3:27525558-27525569
Coord C2 exon
chr3:27493908-27493989
Length
12 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TGAGAATAATTTGTTTTTAGGGT
3' ss Score
5.6
Exon sequences
Seq C1 exon
GCAGACCGCGCGGGGCAGTACCGTAGCGGCCGTCACGGGCTGGCCGGCCGGCCATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGG
Seq A exon
GTAACGAGCAGG
Seq C2 exon
GGTCCTGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-0-6,1-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079317=CPT=PU(32.4=85.7)
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGATGAGACCGCTACT
R:
CAAACTTGGTGTTCACAGTTGAGC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)