HsaALTD0006038-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27493908-27525670:-
Coord C1 exon
chr3:27525570-27525670
Coord A exon
NA
Coord C2 exon
chr3:27493908-27493989
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACG
5' ss Score
6.95
3' ss Seq
TGAGAATAATTTGTTTTTAGGGT
3' ss Score
5.6
Exon sequences
Seq C1 exon
GCAGACCGCGCGGGGCAGTACCGTAGCGGCCGTCACGGGCTGGCCGGCCGGCCATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGG
Seq A exon
NA
Seq C2 exon
GGTCCTGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-0-6,1-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079317=CPT=PU(32.4=85.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGATGAGACCGCTACT
R:
CAAACTTGGTGTTCACAGTTGAGC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)