HsaEX0061129 @ hg19
Exon Skipping
Gene
ENSG00000105866 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:11209]
Coordinates
chr7:21516697-21521741:+
Coord C1 exon
chr7:21516697-21516925
Coord A exon
chr7:21521120-21521300
Coord C2 exon
chr7:21521542-21521741
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTTGCTTTTTTTAGAAT
3' ss Score
9.85
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTCAGCAGCAAGGACAAGATGGAGTAAAAGTCCAGCAAGCTACTATAGCTCCTGTAACTGTAGCAGTTGGAGGAATTGCTAATGCCACGATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGACTTCTGATCAAGAGGTACAACCTGGCAAGAGGCTTCGAAGAGTTGCCTGTTCCTGTCCTAATTGTAGGGAAGGAGAAGGAAG
Seq A exon
AATTTTCACTGGGAAACAGATCCATGGAACTCCTCACACTGCCCTGCTAGAAACGAAACTCTGCATCTTACACTTTTAACTGGATTTAGCCATCCTTTTGAAATTTTAGAGAAGTTTCAAGTGTTTTGAAAGGCTTAGAGAGATTTTTTTCCCAAGGGAAGAGCCCACTATGACCAGGAAC
Seq C2 exon
AGGCAGTAATGAACCAGGAAAAAAGAAGCAGCATATCTGTCATATTGAAGGATGTGGTAAAGTTTATGGCAAAACATCTCATTTACGAGCACATCTTCGCTGGCATACTGGAGAAAGACCTTTTATATGCAACTGGATGTTTTGTGGCAAAAGATTCACACGGAGTGATGAGCTCCAGAGACATAGAAGAACCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105866-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.154 C2=0.324
Domain overlap (PFAM):
C1:
PF140161=DUF4232=PD(94.4=94.4)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAGAGGCTTCGAAGAG
R:
TCTCTGGAGCTCATCACTCCG
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)