HsaEX0061129 @ hg38
Exon Skipping
Gene
ENSG00000105866 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr7:21477079-21482123:+
Coord C1 exon
chr7:21477079-21477307
Coord A exon
chr7:21481502-21481682
Coord C2 exon
chr7:21481924-21482123
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTTGCTTTTTTTAGAAT
3' ss Score
9.85
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTCAGCAGCAAGGACAAGATGGAGTAAAAGTCCAGCAAGCTACTATAGCTCCTGTAACTGTAGCAGTTGGAGGAATTGCTAATGCCACGATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGACTTCTGATCAAGAGGTACAACCTGGCAAGAGGCTTCGAAGAGTTGCCTGTTCCTGTCCTAATTGTAGGGAAGGAGAAGGAAG
Seq A exon
AATTTTCACTGGGAAACAGATCCATGGAACTCCTCACACTGCCCTGCTAGAAACGAAACTCTGCATCTTACACTTTTAACTGGATTTAGCCATCCTTTTGAAATTTTAGAGAAGTTTCAAGTGTTTTGAAAGGCTTAGAGAGATTTTTTTCCCAAGGGAAGAGCCCACTATGACCAGGAAC
Seq C2 exon
AGGCAGTAATGAACCAGGAAAAAAGAAGCAGCATATCTGTCATATTGAAGGATGTGGTAAAGTTTATGGCAAAACATCTCATTTACGAGCACATCTTCGCTGGCATACTGGAGAAAGACCTTTTATATGCAACTGGATGTTTTGTGGCAAAAGATTCACACGGAGTGATGAGCTCCAGAGACATAGAAGAACCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105866_MULTIEX1-9/10=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.332 A=0.154 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
Main Inclusion Isoform:
ENST00000222584fB6636
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAGAGGCTTCGAAGAG
R:
TCTCTGGAGCTCATCACTCCG
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development