HsaEX0062041 @ hg38
Exon Skipping
Gene
ENSG00000136840 | ST6GALNAC4
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:17846]
Coordinates
chr9:127909951-127912680:-
Coord C1 exon
chr9:127912268-127912680
Coord A exon
chr9:127910415-127910528
Coord C2 exon
chr9:127909951-127910058
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAATTATCTCCACTTCACAGACT
3' ss Score
6.34
5' ss Seq
ACGGTGCCC
5' ss Score
3.29
Exon sequences
Seq C1 exon
CCGCTGGTCCGCGAGCCCTGCCGCAGCTGTGCCGTGGTGTCCAGCTCCGGCCAAATGCTGGGCTCAGGCCTGGGTGCTGAGATCGACAGTGCCGAGTGCGTGTTCCGCATGAACCAGGCGCCCACCGTGGGCTTTGAGGCGGATGTGGGCCAGCGCAGCACCCTGCGTGTCGTCTCACACACAAGCGTGCCGCTGCTGCTGCGCAACTATTCACACTACTTCCAGAAGGCCCGAGACACGCTCTACATGGTGTGGGGCCAGGGCAGGCACATGGACCGGGTGCTCGGCGGCCGCACCTACCGCACGCTGCTGCAGCTCACCAGGATGTACCCCGGCCTGCAGGTGTACACCTTCACGGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAGGACGAGACGGGCAAGAACCG
Seq A exon
ACTGGTCATGAGGCTCAGAGAGGTTCACGAGCAAATGTGATGCCCATAGCAGAGCCAGGGTTCAAGTGGAAGATCCTTGGACTCTAGAGAACCCCCACCTGACTTCAAACCACG
Seq C2 exon
GAGGCAGTCGGGCTCCTTCCTCAGCACCGGCTGGTTCACCATGATCCTCGCGCTGGAGCTGTGTGAGGAGATCGTGGTCTATGGGATGGTCAGCGACAGCTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136840_MULTIEX1-6/7=5-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(59.8=99.2)
A:
PF0077713=Glyco_transf_29=PD(0.7=7.1)
C2:
PF0077713=Glyco_transf_29=FE(14.8=100)
Main Inclusion Isoform:
ENST00000335791fB6733
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGCTCTACATGGTGTGG
R:
CACGATCTCCTCACACAGCTC
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development