DreEX0075597 @ danRer10
Exon Skipping
Gene
ENSDARG00000100804 | st6galnac4
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Source:ZFIN;Acc:ZDB-GENE-060322-6]
Coordinates
chr21:3689534-3692901:-
Coord C1 exon
chr21:3692492-3692901
Coord A exon
chr21:3691240-3691347
Coord C2 exon
chr21:3689534-3689998
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATATATGTTCTGTCTGTCAGGAT
3' ss Score
8.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGCTGGACTTCCACTGTGGTCGCTGTGCCGTGGTGTCGAGTTCGGGGCAGATGTTGGGCGGTGGACGAGGGCCAGAGATCGACCAGCAGGACTGCGTGATCCGGATGAACGTGGCTCCGACCGCCGGGTACGAGGCTGACGTGGGGAACAGGACGAGTCTGCGGGTCGTCTCGCACACCAGCGTCCCGCTCCTGGTGCGCCAGCAGGGCTATTTCTTCAGACGAGAGGCGGACACTAAATATGTGATCTGGGGCCCTGAGAAAAACATGCGGCAGGATGGAAAGGGCAAAACCTTTAATGCACTGGTGACGCTGGCCAAGAAATATCCACATTCACACGTACACACCATCACCAGAGAGAAAGTGCAGTACTGCGACGGCGTGTTTCAAAACGAGACTGGCAAAAACAG
Seq A exon
GATGAAATCAGGAGCGTTTCTGAGTACAGGATTTTTTACCATGATTTTGGCTCTGGAGGTGTGTGACAGTATTCTGGTTTATGGAATGATTGATGGCTCCTATTGCAG
Seq C2 exon
TAATGCTAACCACTCATTTGTGCCATACCACTACTATGAGCCGCTGCATCTGGATGAGTGCCGCATGTACCGCGTTCACGAACACGCCAAGAGAGGCGGCCATCGCTTCATCACAGAGAAACTGATTTACAGCCGCTGGGCGTCTCAGGGGAAACTGCGCTTCGTTTATCCTCCGTGGACATCGCAGGAACACCAGCCGCCCTAATTCAACCACTTCTGCTATGTGGTCAAACGTAGGTCAGGCTTTAGTGTATGTTTACGCTAATATCACAAACCACTATGGTGCTTTTAGTGTGTAAATCCAGCCATTAGTTTGGCTTTCGAATCTTGCTGCTTTGCCTTTTTTTAATATTCGGTCCGATTTTATTGCTTTAGTATTAATGGGGTCATGAACTAACAATAGAACTCTCTAAGGTGCGTTTATGATTTTTAAAAGTTTTTTACATGAAAAAAAATCATCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100804-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(58.7=98.5)
A:
PF0077713=Glyco_transf_29=FE(15.7=100)
C2:
PF0077713=Glyco_transf_29=PD(25.2=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGCTGGCCAAGAAATA
R:
CCCAGCGGCTGTAAATCAGTT
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]