MmuEX0045150 @ mm10
Exon Skipping
Gene
ENSMUSG00000079442 | St6galnac4
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Source:MGI Symbol;Acc:MGI:1341894]
Coordinates
chr2:32593990-32599698:+
Coord C1 exon
chr2:32593990-32594402
Coord A exon
chr2:32595694-32595801
Coord C2 exon
chr2:32597014-32599698
Length
108 bp
Sequences
Splice sites
3' ss Seq
CGGTGTCTCATCCTCCTCAGGAG
3' ss Score
8.3
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
CCTCTTATCCGAGAACTGTGCCACAGCTGTGCGGTGGTGTCCAGCTCTGGCCAGATGCTGGGTTCAGGCCTGGGTGCCCAGATCGATGGCGCAGAGTGCGTGCTACGCATGAACCAGGCACCCACCGTGGGCTTTGAGGAGGACGTGGGCCAGCGCAGCACTCTGCGCGTGATCTCTCACACAAGTGTGCCATTGCTTCTGCGCAACTACTCACACTATTTCCAGCATGCCCGAGACACGCTCTACGTGGTGTGGGGCCAGGGCAGGCACATGGACAGGGTGCTGGGCGGCCGCACCTACCGAACGTTGCTGCAGCTCACCAGAATGTATCCAGGCCTGCAAGTGTACACCTTCACTGAACGCATGATGGCCTACTGTGACCAGATCTTCCAAGATGAGACAGGCAAGAACCG
Seq A exon
GAGACAATCAGGCTCCTTTCTCAGCACCGGTTGGTTCACCATGATTCTGGCCCTGGAGCTGTGCGAGGAGATCGTGGTCTACGGGATGGTCAGCGATAGTTACTGCAG
Seq C2 exon
CGAGAAGAGTCCCCGCTCCGTGCCCTACCACTACTTTGAGAAGGGCCGGCTAGATGAGTGTCAGATGTACCGTTTGCATGAGCAGGCTCCAAGGAGCGCCCATCGCTTCATTACCGAGAAGGCTGTGTTCTCCCGCTGGGCCAAGAAGCGACCCATCGTGTTCGCCCACCCGTCCTGGAGGGCCAAGTAGTTCCTGTTGCCAGTGACTGCCAGGCCTCAGCCAGGCCTGTGACCCATTCCAGGCCAACACGGCTCTAATGTGAGCATTTATGACTCACCTTCTACCTGACACCAGGTAGAACATGAAGTCTCTATTACCCAACACTGGGTACACTCGGAGGAACCTCAGGCCTTGTGACTTGAAGAGGAGTCGAGAAGATGCCATTTACACCACCCCTGCTTCCAGAAGAATCCACATCTTCATCTTGGGGTTTGTCCCACTGCCAGGTTGTTTAAGTGACCTTTGCCCTGGGTCCGTCGATGGCCCCACCTCACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079442-'6-17,'6-11,10-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(54.6=100)
A:
PF0077713=Glyco_transf_29=FE(14.3=100)
C2:
PF0077713=Glyco_transf_29=PD(22.3=87.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTATTTCCAGCATGCCCG
R:
TAGCCGGCCCTTCTCAAAGTA
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types