RnoEX0086477 @ rn6
Exon Skipping
Gene
ENSRNOG00000048870 | St6galnac4
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Source:RGD Symbol;Acc:1303005]
Coordinates
chr3:11614487-11619593:+
Coord C1 exon
chr3:11614487-11614899
Coord A exon
chr3:11616202-11616309
Coord C2 exon
chr3:11617593-11619593
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCGTGTCTCATCCTCCTCAGGAG
3' ss Score
8.53
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
CCGCTTACCCGAGAACTGTGCCACAGCTGTGCGGTGGTGTCCAGCTCTGGCCAGATGCTGGGTTCGGGCCTGGGTGCTCAGATCGATGGTGCGGAGTGCGTGCTCCGCATGAACCAGGCACCCACTGTGGGCTTTGAGGAGGACGTGGGCCAGCGCAGCACTCTGCGCGTGATCTCGCACACGAGTGTGCCGTTACTGCTGCGTAACTACTCACACTATTTCCAGCATGCCCGAGACACGCTCTACGTGGTGTGGGGCCAGGGCAGGCACATGGACCGGATGCTGGGCGGCCGCACCTACCGCACATTGCTTCAGCTCACCAGAATGTACCCAGGCCTGCAAGTGTACACCTTCACTGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAAGATGAGACGGGCAAGAACCG
Seq A exon
GAGACAATCAGGCTCCTTCCTTAGCACCGGTTGGTTCACCATGATTCTGGCCCTGGAGCTGTGCGAGGAGATCGTGGTCTACGGGATGGTCAGTGATAGCTACTGCAG
Seq C2 exon
TGAGAAGAGTCCTCGCTCCGTGCCCTACCACTACTTTGAGAAGGGCAGGCTGGATGAGTGTCAGATGTACCGTTTGCACGAGCAGGCTCCGAGGAGCGCCCATCGCTTTATCACCGAGAAGGCTGTGTTCTCCCGCTGGGCCAAGAAGCGGCCCATCGTGTTCGCCCACCCGTCCTGGAAGGCCAAGTAGTTCCTGTTGCCAGTGACCACCAGGCCTGTGACCCATTCCAGGCCAGCTCGCTCCAGTATAAACATTTATGACTTTCACCTTCTACCTGACACCAGGTCTCTGTTACCCAATGCTGGGTGCACTTGGAGGAATCTCAGGCCTTGTGACTTGAAGGGGAGTGGAGAGGGTGCCATTCGTACCACCCCTGCTTCCAGAAGAATCCACTTCATCTTGGGGTTTGTCCCACCTCCAGGTTGTTTAAGTGGCCTTTGTCCTGGGGCCGATGACCCCACCTCACCAGCATTATGGCTTCGTAACAGTCTTCATCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048870_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(56.4=100)
A:
PF0077713=Glyco_transf_29=FE(14.8=100)
C2:
PF0077713=Glyco_transf_29=PD(23.0=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACCGCACATTGCTTCAG
R:
GAGAACACAGCCTTCTCGGTG
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]