GgaEX1055718 @ galGal3
Exon Skipping
Gene
ENSGALG00000005063 | ST6GALNAC4
Description
NA
Coordinates
chr17:5506481-5507302:+
Coord C1 exon
chr17:5506481-5506893
Coord A exon
chr17:5506979-5507086
Coord C2 exon
chr17:5507158-5507302
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCACCGCTGTGCCCCGCAGGGT
3' ss Score
9.61
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCGCTGCGCAGAGCTCCGTGCCGCCGCTGCGCCGTGGTCTCCAGCTCGGGGCAGATGCTGGGATCGCACCTGGGCCGGGAGATCGACGGGCAGGAGTGCGTGCTGCGCATGAACCACGCCCCCACCGCCGGCTTCGAGGAGGACGTGGGCACGCGGAGCACCGTCCGCGTCGTGTCGCACACCAGCGTCCCGCTGCTGCTCAGGAACCAGCCCTACTTCTTCCAGCAGTCCCGGGACACCATCTACGTCATTTGGGGTCCCAGCAGGAAGATGAGCCGCGAGAAGGGCGGCCCGACGTACCGAGCCCTGCTCAGGGTGCTGGAGATGTACCCCCGCCTGCAGCTCTACACGCTGACTGAGGAGAAGATGGCGTATTGCGACGACGTCTTCCAGAACGAGACAGGGAAGAACAG
Seq A exon
GGTGAAATCCGGCTCCTTCCTGAGCACAGGGTGGTTCACCATGATCCTGGCCATGGAGCTGTGCGAGCACATCTGCGTCTTCGGCATGGTCAGCGACAGCTACTGCAG
Seq C2 exon
GGAGAAGAACCACTCGAGCGTGCCTTACCACTACTTCGAGAAGGGGCGGCTGGATGAGTGCAGGATGTACAAGGTGCACGAGAGGGCCCCCCGCGCCGGGCACCGCTTTAAAAGGGAAAAAGCCATCTTCTCCCGCTGGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005063-'1-4,'1-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(56.8=100)
A:
PF0077713=Glyco_transf_29=FE(14.9=100)
C2:
PF0077713=Glyco_transf_29=PD(18.7=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGTCATTTGGGGTCCCA
R:
TGCACCTTGTACATCCTGCAC
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]