HsaEX0062456 @ hg19
Exon Skipping
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:11398]
Coordinates
chr6:31940079-31946787:+
Coord C1 exon
chr6:31940079-31940288
Coord A exon
chr6:31940398-31940534
Coord C2 exon
chr6:31946680-31946787
Length
137 bp
Sequences
Splice sites
3' ss Seq
GAGCCGATTTATCTGCCCAGGGT
3' ss Score
3.83
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GAGGGACGCCCGGGGAGACCGTACGTCACTGCTCTGCGCCGGAAGACCCTATTTTCAGGTTCTCTTCCCTCCATTCCTACCCCTTCCCCGGTACCATAAAATCCCGGGATATGAGCTGGAAGAGGCATCACCTGATCCCGGAGACCTTTGGAGTTAAGAGGCGGCGGAAGCGAGGGCCTGTGGAGTCGGATCCTCTTCGGGGTGAGCCAG
Seq A exon
GGTCGGCGCGCGCGGCTGTCTCAGAACTCATGCAGCTGTTCCCGCGAGGCCTGTTTGAGGACGCGCTGCCGCCCATCGTGCTGAGGAGCCAGGTGTACAGCCTTGTGCCTGACAGGACCGTGGCCGACCGGCAGCTG
Seq C2 exon
AAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTGGGCTTCGACTTGGATGCCCATGGAATTATCTTCACTGAGGACTACAGGACCAGAGTATGTGACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.548 A=0.076 C2=0.152
Domain overlap (PFAM):
C1:
PF104944=Stk19=PU(0.4=1.4)
A:
PF104944=Stk19=FE(20.2=100)
C2:
PF104944=Stk19=FE(15.7=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCGTACGTCACTGCTCT
R:
GAAGCCCAGCTGGACGATTC
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)