MmuEX6077220 @ mm9
Exon Skipping
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34969391-34973890:-
Coord C1 exon
chr17:34973722-34973890
Coord A exon
chr17:34973375-34973511
Coord C2 exon
chr17:34969391-34969486
Length
137 bp
Sequences
Splice sites
3' ss Seq
ACGCGCTTGCTCCACCACAGGCT
3' ss Score
6.34
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCGTCATTATTCTGTGCCGGAAGACGCGGTCTTCGGGACTCCTTTCCCGGAATCCTGAAATCCGGGTTATGAATCGCAAGAGACGGCTCCTGGCGTCTGAGGCTTTTGGGGTGAAGCGGAGGCGGGCGCCGGGGCCCGTGAGAGCGGATCCTTTAAGAACAAGAGCAG
Seq A exon
GCTCGGCGCGCGAGGCCATCGAGGAGCTCGTGAAGCTGTTTCCCCGGGGGCTGTTCGAGGATGCGCTGCCGCCCATCGCGCTGAGGAGCCAAGTGTACAGTCTGGTGCCAGACCGGACGGTGGCCGACCTACAACTG
Seq C2 exon
AAGGAGCTTCAAGAGCTGGGAGAGATCCGAATTATCCAGCTAGGCTTTGACTTGGATGCTCATGGGATTGTCTTCACGGAAGACTACAGGACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207-'0-4,'0-1,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=PU(2.2=14.7)
A:
PF104944=Stk19=FE(20.2=100)
C2:
PF047367=Eclosion=PU(2.6=5.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCTGTGCCGGAAGACGC
R:
GGGTCCTGTAGTCTTCCGTGA
Band lengths:
256-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: