DreEX0075984 @ danRer10
Exon Skipping
Gene
ENSDARG00000086628 | stk19
Description
serine/threonine kinase 19 [Source:ZFIN;Acc:ZDB-GENE-000616-11]
Coordinates
chr3:56545968-56549661:-
Coord C1 exon
chr3:56549365-56549661
Coord A exon
chr3:56546470-56546615
Coord C2 exon
chr3:56545968-56546203
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTCTGATGTTTATTCTTCAGACG
3' ss Score
6.96
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AGATTTACCACTCTCTCTAATCACCAGAGAAGAAGACTCACAGTCAGATACTGCTGGTGTGTTTTGATTACTTGTGAGCAAACATTTCAAACTCAAAAGCAGAAGAAAATGAATTTTTGATAACTATAAAAAAAATCATATATTGGCTAGATGAGGAAAACGGATAAGTGAACTCTGTAATAATAGCAGCAGTGTTTAAAATCAGCAAAATGAGCCGAAAAAGAGCTCTGATCGCGGACACTTTCTGTTTGAAGAGACGCAGATGTGCAGCTGACAGTTTAACGGGAGAGACTCACG
Seq A exon
ACGGAGCCACTGATATTCGCTCAAGCATACAGTATTTGATGACGCTGTTTTCACGCAAACTTTTCAACGACACACTTCCTCCAGTCGTCCTGAAACACCAGCTGTACAGTTTACACACTGACAAAACCTCAGTGGACAAGCATGTG
Seq C2 exon
AATGATTTGCGTGAAAACGGCGAGCTGCTGATGTTCCAGCTGGGCTTCGACTCGGAGGCCTTCGCTCTGGTGTTTGCTGAGGATTACAGAGCCAAAGTCCTTCAGGAGGAAGCTGGAAGAAAAACCCTGGGAGCCGCTGAGAAGTTTCTGGATAAGCTCATTCCCGGCTGCTCCGATTTAAGTTTCAACAAAGACAAAATGCTGAAAGAGTTCCTCTTCTCCGACTCTGAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086628-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF104944=Stk19=PU(1.8=13.3)
A:
PF104944=Stk19=FE(21.3=100)
C2:
PF104944=Stk19=FE(34.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAGCTCTGATCGCGGAC
R:
GCCGGGAATGAGCTTATCCAG
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]