HsaEX0062549 @ hg19
Exon Skipping
Gene
ENSG00000198648 | STK39
Description
serine threonine kinase 39 [Source:HGNC Symbol;Acc:17717]
Coordinates
chr2:168869144-168873605:-
Coord C1 exon
chr2:168873553-168873605
Coord A exon
chr2:168872985-168873025
Coord C2 exon
chr2:168869144-168869212
Length
41 bp
Sequences
Splice sites
3' ss Seq
TCTGCGGTTATTACCTGCAGGAA
3' ss Score
8.56
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAACTCCAGAAAGGAACTTAATGACATACGATTTGAGTTTACTCCAGGAAGAG
Seq A exon
GAAGACACAAACTCAGATGTCCACAGAAGCCAAAGTGAATG
Seq C2 exon
ATACAGCAGATGGTGTATCTCAGGAGCTCTTCTCTGCTGGCTTGGTGGATGGTCACGATGTAGTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198648-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=1.000 C2=0.056
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
PF122023=OSR1_C=PD(3.7=7.7)
C2:
PF122023=OSR1_C=PD(18.8=25.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTTAATGACATACGATTTGAG
R:
TAACTACATCGTGACCATCCACC
Band lengths:
108-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)