HsaEX0062549 @ hg38
Exon Skipping
Gene
ENSG00000198648 | STK39
Description
serine/threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
Coordinates
chr2:168012634-168017095:-
Coord C1 exon
chr2:168017043-168017095
Coord A exon
chr2:168016475-168016515
Coord C2 exon
chr2:168012634-168012702
Length
41 bp
Sequences
Splice sites
3' ss Seq
TCTGCGGTTATTACCTGCAGGAA
3' ss Score
8.56
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAACTCCAGAAAGGAACTTAATGACATACGATTTGAGTTTACTCCAGGAAGAG
Seq A exon
GAAGACACAAACTCAGATGTCCACAGAAGCCAAAGTGAATG
Seq C2 exon
ATACAGCAGATGGTGTATCTCAGGAGCTCTTCTCTGCTGGCTTGGTGGATGGTCACGATGTAGTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198648-'75-70,'75-69,76-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
PF122023=OSR1_C=PD(3.7=7.7)
C2:
PF122023=OSR1_C=PD(18.8=25.0)
Main Inclusion Isoform:
ENST00000355999fB6782
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTTAATGACATACGATTTGAG
R:
TAACTACATCGTGACCATCCACC
Band lengths:
108-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development