HsaEX0062619 @ hg19
Exon Skipping
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:16462]
Coordinates
chr9:125946411-126030897:-
Coord C1 exon
chr9:126030715-126030897
Coord A exon
chr9:125999109-125999248
Coord C2 exon
chr9:125946411-125946577
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCTAATTTTTGTATTTTTAGTAG
3' ss Score
3.6
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCACGTGCTCGCTGCCGCCGCTGCCGCCGCCGAAGCGGAGACCGGAGCCGCGAGCGCCACCAGGGCAGCAGCCGCCGCAGCCGCCGCCGCTGGGCAGAGGAGCCGGAGACGCGAGCGGGCGAGGTGGCGGCGGCGGCGGAGCGGGAGCGGGTACCGGGCGCGGGCAGAGCGCGGCGGCGCGG
Seq A exon
TAGAGACGGGGTTTTGCCATGTTGACCTGGCTGGTCTCGAACTCCTGAACGCAAGTGATCCGCCTGCCTCAGCCTCCCAAGGTGCTGGGATTACAGGCACGAGCCACTGTGCCTGGCCTCAACTGTTGCTTCTTATAAAG
Seq C2 exon
GTGTGTTCCAGAGAACAAGCCTTCAGACATTTGCTATATTGACGCTGAGCTGTCAGGGGACTCAGGCTTATGAGGAGGTATTGTTACACAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGGGGAAAGGATCGGAAAAAGAAGCTAAAATACTATAGAAAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.059
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGGAGCCGGAGAC
R:
GTATTTTAGCTTCTTTTTCCGATCCT
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)