HsaEX0062619 @ hg38
Exon Skipping
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]
Coordinates
chr9:123184132-123268564:-
Coord C1 exon
chr9:123268436-123268564
Coord A exon
chr9:123236830-123236966
Coord C2 exon
chr9:123184132-123184298
Length
137 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGTATTTTTAGTAGAGA
3' ss Score
2.24
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCGCCACCAGGGCAGCAGCCGCCGCAGCCGCCGCCGCTGGGCAGAGGAGCCGGAGACGCGAGCGGGCGAGGTGGCGGCGGCGGCGGAGCGGGAGCGGGTACCGGGCGCGGGCAGAGCGCGGCGGCGCGG
Seq A exon
AGACGGGGTTTTGCCATGTTGACCTGGCTGGTCTCGAACTCCTGAACGCAAGTGATCCGCCTGCCTCAGCCTCCCAAGGTGCTGGGATTACAGGCACGAGCCACTGTGCCTGGCCTCAACTGTTGCTTCTTATAAAG
Seq C2 exon
GTGTGTTCCAGAGAACAAGCCTTCAGACATTTGCTATATTGACGCTGAGCTGTCAGGGGACTCAGGCTTATGAGGAGGTATTGTTACACAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGGGGAAAGGATCGGAAAAAGAAGCTAAAATACTATAGAAAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209-'0-10,'0-2,5-10
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.158
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGGAGCCGGAGAC
R:
GTATTTTAGCTTCTTTTTCCGATCCT
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development