HsaEX0062850 @ hg19
Exon Skipping
Gene
ENSG00000165416 | SUGT1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987]
Coordinates
chr13:53231667-53232603:+
Coord C1 exon
chr13:53231667-53231757
Coord A exon
chr13:53232234-53232361
Coord C2 exon
chr13:53232534-53232603
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTACCTTCTGAATAGGGA
3' ss Score
7.31
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAATTACTGTG
Seq A exon
GGAAAAACTGAATACCTTGAGTAAAATTACATAGAAAATGTTAATGAGACAAGGAGGTGAATTTTGTGACACAGCTGTATTCATTGAAGAGCTTTAAGAAGGAAGCTAAATGTTAAGCCAAAAGGAAG
Seq C2 exon
TTGCTGTTGCTGATGCAAAGAAGTCTCTAGAACTCAATCCAAATAATTCCACTGCTATGCTGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(52.6=100)
A:
PF134141=TPR_11=PU(9.4=71.4)
C2:
PF134141=TPR_11=PD(22.8=54.2),PF134141=TPR_11=PU(17.0=37.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTAAGGCTTTGGAACA
R:
CCTTTTCTCAGCATAGCAGTGGA
Band lengths:
160-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)