HsaEX0062850 @ hg38
Exon Skipping
Gene
ENSG00000165416 | SUGT1
Description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:HGNC Symbol;Acc:HGNC:16987]
Coordinates
chr13:52657532-52658468:+
Coord C1 exon
chr13:52657532-52657622
Coord A exon
chr13:52658099-52658226
Coord C2 exon
chr13:52658399-52658468
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTACCTTCTGAATAGGGA
3' ss Score
7.31
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAATTACTGTG
Seq A exon
GGAAAAACTGAATACCTTGAGTAAAATTACATAGAAAATGTTAATGAGACAAGGAGGTGAATTTTGTGACACAGCTGTATTCATTGAAGAGCTTTAAGAAGGAAGCTAAATGTTAAGCCAAAAGGAAG
Seq C2 exon
TTGCTGTTGCTGATGCAAAGAAGTCTCTAGAACTCAATCCAAATAATTCCACTGCTATGCTGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(52.6=100)
A:
NA
C2:
PF134141=TPR_11=PD(22.8=54.2),PF134141=TPR_11=PU(17.0=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTAAGGCTTTGGAACA
R:
CCTTTTCTCAGCATAGCAGTGGA
Band lengths:
160-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development