HsaEX0063759 @ hg38
Exon Skipping
Gene
ENSG00000108239 | TBC1D12
Description
TBC1 domain family member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr10:94441896-94474783:+
Coord C1 exon
chr10:94441896-94442019
Coord A exon
chr10:94447635-94447670
Coord C2 exon
chr10:94474668-94474783
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCACATGTGTTCTCTTGCAGATG
3' ss Score
12.63
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
AAACCTTTTTCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGTTGGAAATTATTTGGTAAAGTCCCTCCTAGAGAGAATCTTCAGAAAACATCCAAAATCATTCAGCAG
Seq A exon
ATGTGAAATTCCGCTTGTGGCCTTTTGAACCAGTTG
Seq C2 exon
GAATATGAAGCACGAACGGGGAGGACCTGTAAACCACCACCTCAGTCTTCAAGACGCAAGAATTTTGAATTTGAGCCGCTTTCTACCACTGCCTTGATTCTTGAGGATCGACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108239_MULTIEX1-2/15=C1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=1.000 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000225235fB6938
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAGTGCTCCTGGTTGGA
R:
AGGTGGTGGTTTACAGGTCCT
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development