HsaEX0063759 @ hg19
Exon Skipping
Gene
ENSG00000108239 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:29082]
Coordinates
chr10:96201653-96234540:+
Coord C1 exon
chr10:96201653-96201776
Coord A exon
chr10:96207392-96207427
Coord C2 exon
chr10:96234425-96234540
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCACATGTGTTCTCTTGCAGATG
3' ss Score
12.63
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
AAACCTTTTTCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGTTGGAAATTATTTGGTAAAGTCCCTCCTAGAGAGAATCTTCAGAAAACATCCAAAATCATTCAGCAG
Seq A exon
ATGTGAAATTCCGCTTGTGGCCTTTTGAACCAGTTG
Seq C2 exon
GAATATGAAGCACGAACGGGGAGGACCTGTAAACCACCACCTCAGTCTTCAAGACGCAAGAATTTTGAATTTGAGCCGCTTTCTACCACTGCCTTGATTCTTGAGGATCGACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108239_MULTIEX1-2/12=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=1.000 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAGTGCTCCTGGTTGGA
R:
AGGTGGTGGTTTACAGGTCCT
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)