HsaEX0063753 @ hg19
Exon Skipping
Gene
ENSG00000108239 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:29082]
Coordinates
chr10:96203085-96207427:+
Coord C1 exon
chr10:96203085-96203180
Coord A exon
chr10:96204228-96204296
Coord C2 exon
chr10:96207392-96207427
Length
69 bp
Sequences
Splice sites
3' ss Seq
AAGTAACGTCTCTCGTCTAGAAT
3' ss Score
4.06
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
AGACTTGGTATTGCTATGTTGCCCAGGCTGTCTTCAAACTCCTGGGCTTAAATGATGATGCTCCTGCCTCAGCTTCCTGAGAAGCTGGGACTACAG
Seq A exon
AATGTTTCAGAAGACCAAGTTCGCCCTCTAGAGGCAAAACGGTGGTCTTGCTACTGAAGGTTTATACAG
Seq C2 exon
ATGTGAAATTCCGCTTGTGGCCTTTTGAACCAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108239-'2-5,'2-4,3-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATTGCTATGTTGCCCAGG
R:
CAACTGGTTCAAAAGGCCACA
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)