BtaEX0035690 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15798261-15824240:+
Coord C1 exon
chr26:15798261-15798384
Coord A exon
chr26:15799933-15799992
Coord C2 exon
chr26:15824125-15824240
Length
60 bp
Sequences
Splice sites
3' ss Seq
AAGTAACCTCTCTTGTCTAGAGT
3' ss Score
3.71
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AAACCTTTTCCCAAAAAGGACAAAAGAACTCAAATCAGTTGTACATAGTGCTCCTGGCTGGAAATTATTTGGTAAAGTCCCTCCCAGAGAGAATCTTCAGAAAACTTCCAAAATCATTCAGCAG
Seq A exon
AGTTTTTCAGAAGACCAAGTTCGCCCTCTAGAGGCAAAAACAGTGGTCTTGCTATTGAAG
Seq C2 exon
GAATATGAAGCACGGATAGGGAGAGCCTGTAAACCACCACCTCAGTCTTCAAGACGAAAGAATTTTGAATTTGAGCCACTTTCTACCACTGCCCTGATTCTTGAGGATCGACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.050 C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000012783fB6951
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAGTGCTCCTGGCTGGAA
R:
TCGTCTTGAAGACTGAGGTGGT
Band lengths:
139-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development