DreEX0077401 @ danRer10
Exon Skipping
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5407009-5414010:-
Coord C1 exon
chr12:5413899-5414010
Coord A exon
chr12:5408540-5408596
Coord C2 exon
chr12:5407009-5407130
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTCTCTCTCTTCAGGAA
3' ss Score
13.08
5' ss Seq
GGGGTATGA
5' ss Score
5.41
Exon sequences
Seq C1 exon
GAGTCTGTTCACCAGAAAGCAGAGGGAGGCCCAGAGTGCACCAGGGTGGAAACTGTTTGGAAAGGTCCCGCTGAGAGAGAGTCCTCCTAAAGACTCCAAAACCATTCAGCAG
Seq A exon
GAAAGTAACCCAGGCAATCTCACGTCTGTCTCTACACCCAATCTCTTAAGTTCAGGG
Seq C2 exon
GAGTACGAGGCCAAGGTGTGTAAATCTGGCCAGAGTCCCTCGCTGCCTGCTCAGAGCCGACGGAAGAACCTGGAGTTTGAGCCACTGTCCACCACCGCGCTCATTTTAGAGGACCGACCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=0.789 C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGTCCCGCTGAGAGAGA
R:
GACAGTGGCTCAAACTCCAGG
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]