HsaEX0063867 @ hg19
Exon Skipping
Gene
ENSG00000189375 | TBC1D28
Description
TBC1 domain family, member 28 [Source:HGNC Symbol;Acc:26858]
Coordinates
chr17:18544335-18545046:-
Coord C1 exon
chr17:18544945-18545046
Coord A exon
chr17:18544591-18544666
Coord C2 exon
chr17:18544335-18544417
Length
76 bp
Sequences
Splice sites
3' ss Seq
GGGATGACTTTGTCTTGCAGGAT
3' ss Score
8.04
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AGACATCCAGTCCCTGACTCCACCTGCCTCCAGGTGCCCAGAACAGCCCATCGTGGGGACTTCACCCTCAGCAAGTGGACGCCGTTTGTCCTGCCAGGGCAG
Seq A exon
GATGGAGATGGATGAGGACCCGGATAACCTGCCTGCCCAGGGGCAAGGCAATATCATCATTACTAAGTATGAGCAG
Seq C2 exon
GGACACCGAGCTGGGGCAGCAGTGGACTTGGGGCATGAGCAGGTTGATGTCAGAAAATACACCAATAACCTCGGGATTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189375_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.640 C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCAGTCCCTGACTCCA
R:
GCACAATCCCGAGGTTATTGGT
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)