HsaEX0063867 @ hg38
Exon Skipping
Gene
ENSG00000189375 | TBC1D28
Description
TBC1 domain family member 28 [Source:HGNC Symbol;Acc:HGNC:26858]
Coordinates
chr17:18641022-18641733:-
Coord C1 exon
chr17:18641632-18641733
Coord A exon
chr17:18641278-18641353
Coord C2 exon
chr17:18641022-18641104
Length
76 bp
Sequences
Splice sites
3' ss Seq
GGGATGACTTTGTCTTGCAGGAT
3' ss Score
8.04
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AGACATCCAGTCCCTGACTCCACCTGCCTCCAGGTGCCCAGAACAGCCCATCGTGGGGACTTCACCCTCAGCAAGTGGACGCCGTTTGTCCTGCCAGGGCAG
Seq A exon
GATGGAGATGGATGAGGACCCGGATAACCTGCCTGCCCAGGGGCAAGGCAATATCATCATTACTAAGTATGAGCAG
Seq C2 exon
GGACACCGAGCTGGGGCAGCAGTGGACTTGGGGCATGAGCAGGTTGATGTCAGAAAATACACCAATAACCTCGGGATTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189375_MULTIEX1-4/8=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.710 C2=0.162
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCAGTCCCTGACTCCA
R:
GCACAATCCCGAGGTTATTGGT
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development