HsaEX1040102 @ hg38
Exon Skipping
Gene
ENSG00000189375 | TBC1D28
Description
TBC1 domain family member 28 [Source:HGNC Symbol;Acc:HGNC:26858]
Coordinates
chr17:18637864-18661950:-
Coord C1 exon
chr17:18661914-18661950
Coord A exon
chr17:18641632-18641733
Coord C2 exon
chr17:18637864-18637973
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGAACCATCCTATAGAGA
3' ss Score
4.64
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAGAGCAACCCTGAAAAATTACTGAATGTGAAGAAAT
Seq A exon
AGACATCCAGTCCCTGACTCCACCTGCCTCCAGGTGCCCAGAACAGCCCATCGTGGGGACTTCACCCTCAGCAAGTGGACGCCGTTTGTCCTGCCAGGGCAG
Seq C2 exon
GTCATGAAGGAGAAGGGCAAGAGGTCCTCCAGAATCATCCACTGCATCCAGCTAGATGTCAGCCACACCCTGCAGAAACACATGATGTTCATACAAAGATTCGGAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189375_MULTIEX1-3/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.054
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(37.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAACCCTGAAAAATTACTGA
R:
TTGACTCCGAATCTTTGTATGAACA
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains