HsaEX0064211 @ hg19
Exon Skipping
Gene
ENSG00000110719 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]
Coordinates
chr11:67806483-67808855:+
Coord C1 exon
chr11:67806483-67806586
Coord A exon
chr11:67807259-67807429
Coord C2 exon
chr11:67808735-67808855
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCCGCCCATTACAGGTT
3' ss Score
11.09
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GCGGCGCCTAGTCCCGGGCTGGCGGGAGTGCAGTTCTGAGTCCCGCCCGGCGTGCGCGGAGCGGGGCAGCCAGCAGCGGAGGCGCGGCGCGCAGCACACCCGGG
Seq A exon
GTTGTTCCCCCACCCCCTGGGAAGTGCTGGAAGGAGCCCGGCCCTCGAGCCCTCGGCATAGTGGCTGTGGGAGCCCTGATGGCCCTGAGCCAGGGGTGACCCCTCCCCAGATCCCCAGAGCTGATTCCCCACACCTCCTTATTTGGCCAGCACAGCCCCAAAGGGAGCCAG
Seq C2 exon
GACCATGGGCTCCATGTTCCGGAGCGAGGAGGTGGCCCTGGTCCAGCTCTTTCTGCCCACAGCGGCTGCCTACACCTGCGTGAGTCGGCTGGGCGAGCTGGGCCTCGTGGAGTTCAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0149614=V_ATPase_I=PU(1.6=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTGCAGTTCTGAGTCCC
R:
GTCTCTGAACTCCACGAGGCC
Band lengths:
202-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)