HsaEX0064211 @ hg38
Exon Skipping
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68039016-68040266:+
Coord C1 exon
chr11:68039016-68039119
Coord A exon
chr11:68039792-68039962
Coord C2 exon
chr11:68040166-68040266
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCCGCCCATTACAGGTT
3' ss Score
11.09
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GCGGCGCCTAGTCCCGGGCTGGCGGGAGTGCAGTTCTGAGTCCCGCCCGGCGTGCGCGGAGCGGGGCAGCCAGCAGCGGAGGCGCGGCGCGCAGCACACCCGGG
Seq A exon
GTTGTTCCCCCACCCCCTGGGAAGTGCTGGAAGGAGCCCGGCCCTCGAGCCCTCGGCATAGTGGCTGTGGGAGCCCTGATGGCCCTGAGCCAGGGGTGACCCCTCCCCAGATCCCCAGAGCTGATTCCCCACACCTCCTTATTTGGCCAGCACAGCCCCAAAGGGAGCCAG
Seq C2 exon
ATCCTGTCTCTGTCAGGGGTGCCACGTCCCATTCACCCAAAGAGGAAGTAGAGGCACAGAGAGGGTGAGAGACTTGCCCAAGGTCACACACCCAATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGGGAGTGCAGTTCT
R:
CTGAGATTGGGTGTGTGACCT
Band lengths:
186-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development